| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3803 |
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| Symbol | rnc |
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| ID | 6971223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 3527884 |
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| End bp | 3528564 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643387589 |
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| Product | ribonuclease III |
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| Protein accession | YP_002272042 |
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| Protein GI | 209400787 |
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| COG category | [K] Transcription |
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| COG ID | [COG0571] dsRNA-specific ribonuclease |
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| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.430453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCCCA TCGTAATTAA TCGGCTTCAA CGGAAGCTGG GCTACACTTT TAATCATCAG
GAACTGTTGC AGCAGGCATT AACTCATCGT AGTGCCAGCA GCAAACATAA CGAGCGTTTA
GAATTTTTAG GCGACTCTAT TCTGAGCTAC GTTATCGCCA ATGCGCTTTA TCACCGTTTC
CCTCGTGTGG ATGAAGGCGA TATGAGCCGG ATGCGCGCCA CGCTGGTCCG TGGCAATACG
CTGGCGGAAC TGGCGCGCGA ATTTGAGTTA GGCGAGTGCT TACGTTTAGG ACCAGGTGAA
CTTAAAAGCG GTGGATTTCG TCGTGAGTCA ATTCTCGCCG ACACCGTCGA AGCATTAATT
GGTGGCGTAT TCCTCGACAG TGATATTCAA ACCGTCGAGA AATTAATCCT CAACTGGTAT
CAAACTCGTC TGGACGAAAT TAGCCCAGGC GATAAACAAA AAGATCCGAA AACGCGCTTG
CAAGAATATT TGCAGGGTCG TCATCTGCCG CTGCCGACTT ATCTGGTAGT TCAGGTCCGT
GGCGAAGCGC ACGATCAGGA ATTTACAATC CACTGCCAGG TCAGCGGCCT GAGTGAACCG
GTGGTTGGCA CAGGTTCAAG CCGTCGTAAG GCTGAGCAGG CTGCCGCCGA ACAGGCGTTG
AAAAAACTGG AGCTGGAATG A
|
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| Protein sequence | MNPIVINRLQ RKLGYTFNHQ ELLQQALTHR SASSKHNERL EFLGDSILSY VIANALYHRF
PRVDEGDMSR MRATLVRGNT LAELAREFEL GECLRLGPGE LKSGGFRRES ILADTVEALI
GGVFLDSDIQ TVEKLILNWY QTRLDEISPG DKQKDPKTRL QEYLQGRHLP LPTYLVVQVR
GEAHDQEFTI HCQVSGLSEP VVGTGSSRRK AEQAAAEQAL KKLELE
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