Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_3748 |
Symbol | pbpC |
ID | 6966771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 3470102 |
End bp | 3472414 |
Gene Length | 2313 bp |
Protein Length | 770 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643387540 |
Product | penicillin-binding protein 1C |
Protein accession | YP_002271993 |
Protein GI | 209396651 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 66 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCGCT TGTTAACCAA ACGCGGCTGC TGGATAACGC TGGCAGCTGC GCCATTTCTC CTTTTTCTTG CAGCGTGGGG AGCAGATAAA CTCTGGCCTC TACCGCTGCA TGAAGTCAAT CCCGCACGAG TGGTCGTGGC GCAGGATGGT ACGCCGCTCT GGCGCTTCGC CGATGCTGAC GGCATCTGGC GTTATCCTGT AACAATCGAA GATGTTTCTC CACGTTACCT TGAAGCGCTG ATCAATTATG AAGATCGCTG GTTCTGGAAG CATCCTGGGG TGAATCCATT CTCGGTGGCG CGCGCAGCAT GGCAAGATCT CACTTCGGGA CGGGTTATTT CCGGTGGCAG CACGCTCACT ATGCAGGTTG CTCGTCTGCT TGATCCTCAC CCCAAAACAT TTGGCGGCAA AATTCGCCAG CTCTGGCGCG CGTTGCAACT GGAATGGCAT CTGTCTAAGC GTGAAATTCT GACCTTGTAT CTTAACCGCG CTCCGTTTGG CGGTACGTTG CAGGGGATCG GTGCGGCAAG TTGGGCTTAT CTCGGAAAGT CGCCTGCGAA TTTAAGCTAT TCCGAGGCGG CAATGCTGGC GGTTTTGCCG CAAGCGCCCA GCCGTCTTCG CCCGGATCGT TGGCCGGAGC GTGCCGAAGT CGCGCGTAAT AAAGTGCTCG AACGGATGGC CGTGCAAGGT GTGTGGTCCC GTGAGCAGGT AAAAGAGTCA AGGGAAGAAC CCATCTGGCT GGCACCCCGA CAAATGCCGC AACTGGCACC GCTGTTTTCG CGCATGATGC TCGGTAAAAG CAAAAGCGAC AAAATCGTTA CTACGCTGGA TGCCGGTCTT CAACGACGTC TGGAAGAACT GGCGCAAAAC TGGAAAGGAC GATTACCACC GCGCAGCTCA CTGGCGATGA TCGTGGTTGA TCATACCGAT ATGCGTGTTC GCGGCTGGGT GGGTTCGGTT GATCTCAACG ATGATTCACG CTTTGGTCAT GTTGATATGG TCAATGCGAT CCGATCGCCA GGATCGGTGC TCAAACCGTT TGTTTACGGT CTGGCGCTGG ATGAAGGATT GATCCACCCG GCATCACTGC TGCAAGACGT CCCCCGGCGT ACCGGTGATT ACCGACCTGG CAACTTTGAC AGCGGTTTTC ATGGCCCGAT CAGCATGAGC GAGGCGCTGG TGCGCTCGCT GAATTTACCT GCTGTGCAGG TGCTGGAAGC CTATGGACCG AAACGGTTTG CGGCAAAGTT ACGCAATGTT GGATTGCCGT TATATTTGCC CAACGGTGCT GCGCCGAATC TTTCGCTCAT TCTCGGCGGC GCTGGTGCGA AACTGGAAGA TATGGCGGCA GCGTATACCG CGTTTGCTCG CCACGGCAAG GCAGGCAAAT TGCGCTTACA GCCTGACGAT CCGCTGCTTG AACGGCCTTT AATGTCGTCG GGAGCGGCGT GGATCATTCG CCGGATTATG GCTGATGAAG CGCTACCCTT GCCGGATGGT GCCTTGCCGC GCGTCGCCCC ACTGGCATGG AAAACGGGCA CCAGCTATGG CTATCGTGAC GCCTGGGCGA TTGGGGTTAA CGCTCGCTAT GTCATTGGGA TCTGGACTGG CAGACCGGAC GGCACGCCCG TTGTTGGTCA GTTTGGTTTT GCCAGCGCCG TACCATTGTT GAATCAGGTC AATAATATCT TACTGTCGCG CAGTGCTAAT CTGCCGGAAG ACCCGCGCCC GAACTCAGTC ACTCGTGGCG TTATTTGCTG GCCGGGCGGA CAGTCTTTGC CGGAAGGTGA CGGTAACTGT CGCCGCCGCC TGGCAACCTG GCTGCTGGAC GGGAGTCAGC CGCCAACTCT ATTACTGCCG GAGCAGGAAG GCATTAATGG CATTCGTTTC CCCATCTGGC TGGATGAAAA TGGCAAACGT GTTGCCGCTG ATTGCCCGCA AGCGCGACAA GAAATGATAA ATGTCTGGCC GCTACCGCTG GAACCCTGGT TGCCCGCATC AGAACGTCGC GCTGTGCGCT TACCACCGGC CTCGACAATT TGCCCGCCAT ACGGTCACGA TGCCCAGCTC CCGCTGCAGC TGACAGGCGT TCGCGATGGC GAGATTATTA AACGTTTACC GGGCGCAGCG GAAGCGACTT TGCCGTTGCA ATCAAGTGGA GGGGCAGGTG AACGCTGGTG GTTTCTGAAT GGCGAACCGT TAACTGAACG CGGGCGCAAC GTGACCCTGC ATTTGACGGA TAAAGGTGAT TATCAATTGC TGGTGATGGA TGACGTAGGG CAAATCGCGT CAGTACATTT TTCATTTCAG TGA
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Protein sequence | MPRLLTKRGC WITLAAAPFL LFLAAWGADK LWPLPLHEVN PARVVVAQDG TPLWRFADAD GIWRYPVTIE DVSPRYLEAL INYEDRWFWK HPGVNPFSVA RAAWQDLTSG RVISGGSTLT MQVARLLDPH PKTFGGKIRQ LWRALQLEWH LSKREILTLY LNRAPFGGTL QGIGAASWAY LGKSPANLSY SEAAMLAVLP QAPSRLRPDR WPERAEVARN KVLERMAVQG VWSREQVKES REEPIWLAPR QMPQLAPLFS RMMLGKSKSD KIVTTLDAGL QRRLEELAQN WKGRLPPRSS LAMIVVDHTD MRVRGWVGSV DLNDDSRFGH VDMVNAIRSP GSVLKPFVYG LALDEGLIHP ASLLQDVPRR TGDYRPGNFD SGFHGPISMS EALVRSLNLP AVQVLEAYGP KRFAAKLRNV GLPLYLPNGA APNLSLILGG AGAKLEDMAA AYTAFARHGK AGKLRLQPDD PLLERPLMSS GAAWIIRRIM ADEALPLPDG ALPRVAPLAW KTGTSYGYRD AWAIGVNARY VIGIWTGRPD GTPVVGQFGF ASAVPLLNQV NNILLSRSAN LPEDPRPNSV TRGVICWPGG QSLPEGDGNC RRRLATWLLD GSQPPTLLLP EQEGINGIRF PIWLDENGKR VAADCPQARQ EMINVWPLPL EPWLPASERR AVRLPPASTI CPPYGHDAQL PLQLTGVRDG EIIKRLPGAA EATLPLQSSG GAGERWWFLN GEPLTERGRN VTLHLTDKGD YQLLVMDDVG QIASVHFSFQ
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