| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3599 |
|---|
| Symbol | emrK |
|---|
| ID | 6972239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3314429 |
|---|
| End bp | 3315592 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643387396 |
|---|
| Product | drug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK |
|---|
| Protein accession | YP_002271855 |
|---|
| Protein GI | 209397981 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.0273562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAACAGA TTAATTCAAA TAAAAAACAT TCTAACAGAA GAAAATACTT TTCTTTATTG
GCGATAGTTT TATTTATTGC GTTTTCAGGT GCTTATGCCT ATTGGTCAAT GGAATTAGAA
GACATGATTA GTACAGATGA CGCCTATGTC ACGGGGAATG CAGATCCAAT TTCTGCACAA
GTCTCAGGTA GTGTCACTGT CGTTAATCAT AAAGATACGA ACTACGTTCG ACAGGGTGAC
ATTTTAGTTT CACTGGATAA AACTGATGCC ACTATCGCAC TCAATAAAGC TAAAAATAAT
CTGGCAAATA TTGTTCGGCA AACGAATAAA CTGTACTTAC AGGATAAACA ATACAGTGCC
GAAGTCGCTT CAGCACGTAT TCAGTATCAA CAATCTTTAG AAGATTATAA CCGTCGTGTG
CCTTTAGCGA AGCAGGGGGT TATTTCAAAA GAAACGCTGG AGCATACCAA AGATACGTTA
ATAAGTAGCA AAGCGGCATT GAATGCCGCT ATCCAGGCTT ATAAAGCGAA TAAAGCTTTA
GTAATGAACA CACCATTAAA CCGTCAGCCA CAAGTCGTTG AAGCTGCGGA TGCAACCAAA
GAAGCCTGGT TGGCGCTTAA ACGTACGGAT ATTAAGAGTC CGGTTACCGG CTATATTGCC
CAGAGAAGTG TTCAGGTCGG CGAAACAGTG AGTCCCGGAC AATCGTTAAT GGCTGTCGTA
CCGGCACGTC AAATGTGGGT TAATGCTAAC TTTAAAGAAA CACAACTCAC GGATGTACGG
ATTGGTCAAT CGGTCAATAT TATCAGCGAT CTTTATGGTG AGAATGTTGT GTTTCATGGC
CGGGTGACAG GGATCAATAT GGGAACCGGC AATGCGTTCT CCTTATTACC TGCACAAAAT
GCGACAGGGA ACTGGATCAA AATCGTTCAG CGTGTACCGG TTGAAGTTTC TCTTGATCCA
AAAGAACTCA TGGAACACCC CTTGCGCATT GGTTTATCGA TGACTGCAAC TATTGATACG
AAGAACGAAG ACATTGCTGA GATGCCTGAG CTGGCTTCAA CCGTGACGTC CATGCCGGCT
TATACCAGTA AGGCTTTAGT TATCGATACC AGTCCGATAG AAAAAGAAAT TAGCAACATT
ATTTCGCATA ATGGACAACT TTAA
|
|---|
| Protein sequence | MEQINSNKKH SNRRKYFSLL AIVLFIAFSG AYAYWSMELE DMISTDDAYV TGNADPISAQ
VSGSVTVVNH KDTNYVRQGD ILVSLDKTDA TIALNKAKNN LANIVRQTNK LYLQDKQYSA
EVASARIQYQ QSLEDYNRRV PLAKQGVISK ETLEHTKDTL ISSKAALNAA IQAYKANKAL
VMNTPLNRQP QVVEAADATK EAWLALKRTD IKSPVTGYIA QRSVQVGETV SPGQSLMAVV
PARQMWVNAN FKETQLTDVR IGQSVNIISD LYGENVVFHG RVTGINMGTG NAFSLLPAQN
ATGNWIKIVQ RVPVEVSLDP KELMEHPLRI GLSMTATIDT KNEDIAEMPE LASTVTSMPA
YTSKALVIDT SPIEKEISNI ISHNGQL
|
|---|
| |