| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3406 |
|---|
| Symbol | menD |
|---|
| ID | 6971835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3149464 |
|---|
| End bp | 3151134 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643387214 |
|---|
| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
|---|
| Protein accession | YP_002271677 |
|---|
| Protein GI | 209399910 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
|---|
| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0925414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTAA GCGCATTTAA CCGACGCTGG GCGGCGGTCA TTCTGGAAGC ATTAACGCGT
CACGGCGTAA GACACATCTG CATCGCCCCT GGCTCGCGTT CTACACCGTT AACGTTAGCG
GCGGCGGAGA ATTCCGCATT CATTCACCAC ACCCATTTCG ATGAGCGTGG ACTGGGGCAT
CTGGCGCTGG GGCTGGCGAA AGTCAGCAAG CAGCCGGTGG CGGTGATTGT GACCTCCGGC
ACGGCGGTAG CAAATCTCTA TCCGGCACTG ATTGAAGCTG GGTTAACCGG AGAAAAACTG
ATCCTGTTAA CCGCCGATCG CCCGCCGGAG CTAATTGACT GCGGCGCGAA TCAGGCGATT
CGTCAGCCGG GAATGTTCGC CTCTCACCCC ACGCACAGTA TTTCACTGCC GCGCCCGACC
CAGGATATCC CCGCACGTTG GCTGGTTTCT ACCATCGACC ATGCTCTCGG TACGCTTCAT
GCTGGTGGGG TCCATATCAA CTGCCCGTTT GCTGAACCGC TGTATGGCGA GATGGACGAC
ACTGGGCTTA GCTGGCAACA GCGTCTGGGT GACTGGTGGC AGGATGATAA GCCGTGGCTG
CGTGAAGCGC CTCGTCTTGA GAGCGAAAAA CAGCGCGACT GGTTCTTCTG GCGGCAAAAG
CGCGGCGTGG TGGTTGCCGG GCGCATGAGT GCGGAAGAGG GCAAAAAAGT TGCCCTGTGG
GCGCAAACTC TTGGCTGGCC GCTGATTGGC GACGTGCTGT CGCAAACCGG ACAGCCGCTG
CCGTGTGCCG ATCTCTGGTT AGGCAATGCC AAAGCGACCA GCGAACTGCA ACAGGCGCAA
ATTGTGGTGC AACTGGGAAG CAGCCTGACG GGCAAACGGC TCCTGCAATG GCAGGCAAGC
TGTGAACCCG AAGAGTACTG GATTGTGGAT GACATCGAAG GGCGGCTTGA TCCGGCACAC
CATCGTGGAC GCCGCTTAAT TGCCAATATT GCCGACTGGC TGGAACTGCA TCCGGCAGAA
AAACGCCAGC CCTGGTGCGT TGAAATCCCG CGCCTGGCGG AACAGGCAAT GCAGGCGGTT
ATTGCCTGTC GCGATGCGTT TGGCGAAGCG CAACTGGCGC ATCGCATCAG CGACTATCTG
CCTGAACAGG GGCAATTGTT TGTCGGTAAC AGCCTGGTGG TACGTCTGAT TGATGCGCTT
TCGCAACTTC CGGCAGGTTA CCCGGTGTAC AGCAACCGTG GGGCCAGCGG TATCGACGGG
CTGCTCTCGA CTGCCGCCGG CGTTCAGCGG GCAAGCGGCA AACCGACGCT GGCGATTGTG
GGCGATCTCT CCGCACTTTA CGACCTGAAT GCGCTGGCGT TATTGCGCCA GGTTTCCGCG
CCGCTGGTAT TAATTGTGGT GAACAACAAC GGCGGGCAAA TTTTCTCGCT GCTGCCAACG
CCGAAAAGCG AGCGCGAGCG TTTCTATCTG ATGCCGCAAA ACGTCCATTT TGAGCACGCT
GCCGCGATGT TTGAGCTGAA ATATCATCGT CCGCAAAACT GGCAGGAACT TGAAACGGTA
CTTGCCGACG CCTGGCGTAC TCCGACCACC ACGGTAATTG AAATGGTGGT TAACGACACC
GACGGCGCGC AAACGCTCCA GCAGCTGCTG GCGCAGGTAA GCCATTTATG A
|
|---|
| Protein sequence | MSVSAFNRRW AAVILEALTR HGVRHICIAP GSRSTPLTLA AAENSAFIHH THFDERGLGH
LALGLAKVSK QPVAVIVTSG TAVANLYPAL IEAGLTGEKL ILLTADRPPE LIDCGANQAI
RQPGMFASHP THSISLPRPT QDIPARWLVS TIDHALGTLH AGGVHINCPF AEPLYGEMDD
TGLSWQQRLG DWWQDDKPWL REAPRLESEK QRDWFFWRQK RGVVVAGRMS AEEGKKVALW
AQTLGWPLIG DVLSQTGQPL PCADLWLGNA KATSELQQAQ IVVQLGSSLT GKRLLQWQAS
CEPEEYWIVD DIEGRLDPAH HRGRRLIANI ADWLELHPAE KRQPWCVEIP RLAEQAMQAV
IACRDAFGEA QLAHRISDYL PEQGQLFVGN SLVVRLIDAL SQLPAGYPVY SNRGASGIDG
LLSTAAGVQR ASGKPTLAIV GDLSALYDLN ALALLRQVSA PLVLIVVNNN GGQIFSLLPT
PKSERERFYL MPQNVHFEHA AAMFELKYHR PQNWQELETV LADAWRTPTT TVIEMVVNDT
DGAQTLQQLL AQVSHL
|
|---|
| |