| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3093 |
|---|
| Symbol | |
|---|
| ID | 6971634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 2863461 |
|---|
| End bp | 2864135 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643386924 |
|---|
| Product | gram-negative pilus assembly chaperone |
|---|
| Protein accession | YP_002271392 |
|---|
| Protein GI | 209399857 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.866269 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGGT TATTATCTTT ACTCATCTCT TCTATGATAT TCCCCGTGCA TGCCGGAATG
GTTATTTTCG GGACCCGTAT CATTTACCCG GCAGAGCAGA AAGAGGTCAT GGTACAACTG
ATGAATCAGG GAAACCGCTC TTCGCTGATG CAGGCGTGGA TTGATGATGG CGACACGTCT
CTGCCGCCAG AAAAGATTCA GGTTCCTTTC ATGTTAACGC CACCAGTAGT GAAAGTAGCG
GCCAATTCTG GGCAACAAAT AAAAATTAAA ATCATGCCTA ATAAATTACC CAGTAATAAG
GAAAGTATTT TTTATCTTAA TGTTCTGGAT ATTCCACCGA ATAGCCCAGA AGATGAAGGA
AAGAATGCGT TAAAATTTGC CATGCAAAAC AGAATCAAGT TGTTTTACCG ACCTGCTGGT
ATTGCTCCGG TAAATAAAAC GACTTTTAAA AAATTACGAG TGAGTCGTAG CGGTAATAAC
GTAGTCATAA AAAATGACTC GCCAAATTGG GTAACGATTT CTGATGTTAA GGCTAATAAC
GTCAAAGTGA ATTATGAAAC AATCATGATT GCACCACAAG AAAGTCAGAA TGTTAGTGAA
AAAAATAATA ATGCGAATGG CTGGCAACTG ACCATTATCG ATGATCACGG CAACTATATT
AGTGACAAAA TTTAA
|
|---|
| Protein sequence | MKGLLSLLIS SMIFPVHAGM VIFGTRIIYP AEQKEVMVQL MNQGNRSSLM QAWIDDGDTS
LPPEKIQVPF MLTPPVVKVA ANSGQQIKIK IMPNKLPSNK ESIFYLNVLD IPPNSPEDEG
KNALKFAMQN RIKLFYRPAG IAPVNKTTFK KLRVSRSGNN VVIKNDSPNW VTISDVKANN
VKVNYETIMI APQESQNVSE KNNNANGWQL TIIDDHGNYI SDKI
|
|---|
| |