Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_2530 |
Symbol | rnd |
ID | 6969465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 2394987 |
End bp | 2396114 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643386399 |
Product | ribonuclease D |
Protein accession | YP_002270881 |
Protein GI | 209396542 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00950185 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATTACC AAATGATTAC CACGGACGAT GCGCTGGCTT CTTTGTGTGA AGCCGTCCGT GCCTTTCCGG CGATAGCCCT GGATACTGAA TTTGTTCGTA CGCGCACTTA TTACCCGCAG CTGGGGTTGA TTCAACTTTT CGATGGCGAG CATCTGGCGC TAATTGATCC TCTCGGGATC ACCGACTGGT CACCGCTGAA AGCGATCCTG CGCGATCCGT CCATCACAAA ATTTCTCCAT GCAGGCAGTG AAGATCTGGA AGTGTTCCTC AATGTCTTTG GCGAATTACC ACAACCCCTG ATTGACACGC AAATCCTTGC TGCCTTCTGC GGACGCCCGA TGTCATGGGG TTTCGCTTCC ATGGTGGAAG AGTATTCCGG CGTTACGCTG GACAAGAGTG AATCGCGCAC CGACTGGCTG GCCAGACCGC TGACCGAACG TCAGTGTGAA TATGCAGCGG CGGATGTCTG GTATCTGTTA CCGATCACCG CCAAGCTTAT GGTAGAAACG GAGGCCTCCG GCTGGCTACC AGCGGCGCTG GATGAATGTC GCCTGATGCA AATGCGTCGT CAGGAAGTCG TTGCGCCGGA AGATGCCTGG CGTGATATCA CCAATGCCTG GCAATTACGC ACACGCCAAC TGGCCTGTCT GCAACTGTTA GCCGACTGGC GACTGCGCAA GGCGCGAGAG CGCGATCTGG CGGTGAACTT TGTCGTGCGT GAAGAGCATT TGTGGTCGGT AGCGCGTTAT ATGCCGGGAA GTTTAGGCGA ACTGGACAGC CTGGGTTTAT CCGGTAGCGA AATCCGCTTT CACGGTAAAA CGCTGCTGGC GCTGGTGGAA AAAGCGCAGA CATTGCCGGA AGAGGCCTTA CCGCAGCCGA TGCTTAACCT GATGGACATG CCGGGTTATC GTAAAGCGTT TAAAGCGATT AAGTCGCTGA TTACTGACGT GAGCGAAACG CACAAGATCA GCGCCGAATT GCTGGCATCG CGTCGGCAAA TCAACCAACT GCTGAACTGG CACTGGAAAC TGAAACCGCA GAACAATTTG CCGGAGCTGA TTTCCGGCTG GCGTGGTGAG CTGATGGCGG AAGCATTACA CAATTTATTG CAGGAATATC CGCAGTAA
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Protein sequence | MNYQMITTDD ALASLCEAVR AFPAIALDTE FVRTRTYYPQ LGLIQLFDGE HLALIDPLGI TDWSPLKAIL RDPSITKFLH AGSEDLEVFL NVFGELPQPL IDTQILAAFC GRPMSWGFAS MVEEYSGVTL DKSESRTDWL ARPLTERQCE YAAADVWYLL PITAKLMVET EASGWLPAAL DECRLMQMRR QEVVAPEDAW RDITNAWQLR TRQLACLQLL ADWRLRKARE RDLAVNFVVR EEHLWSVARY MPGSLGELDS LGLSGSEIRF HGKTLLALVE KAQTLPEEAL PQPMLNLMDM PGYRKAFKAI KSLITDVSET HKISAELLAS RRQINQLLNW HWKLKPQNNL PELISGWRGE LMAEALHNLL QEYPQ
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