Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1944 |
Symbol | gabT1 |
ID | 6966924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 1840373 |
End bp | 1841638 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643385874 |
Product | 4-aminobutyrate transaminase |
Protein accession | YP_002270363 |
Protein GI | 209400873 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.991898 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACA ATGAATTCCA TCAGCGTCGT CTTTCTGCCA CCCCGCGCGG GGTTGGCGTG ATGTGTAACT TCTTCGCCCA GTCGGCTGAA AACGCCACGC TGAAGGATGT TGAGGGCAAC GAGTACATCG ATTTCGCCGC AGGCATTGCG GTGCTGAATA CCGGACATCG CCACCCTGAT CTGGTCGCGG CGGTGGAGCA GCAGCTGCAA CAGTTTACCC ACACCGCGTA TCAGATTGTG CCATATGAAA GCTACGTCAC CCTGGCGGAG AAAATCAACG CCCTTGCCCC GGTGAGCGGG CAGGCCAAAA CCGCGTTCTT CACCACCGGT GCGGAAGCGG TGGAAAACGC GGTGAAAATC GCCCGCGCCC ATACCGGACG CCCTGGCGTG ATTGCGTTTA GCGGCGGCTT CCACGGTCGT ACGTATATGA CTATGGCGTT AACTGGAAAG GTCGCGCCGT ACAAAATCGG CTTCGGCCCG TTCCCTGGTT CGGTGTATCA CGTACCTTAT CCGTCAGATT TACACGGCAT TTCAACACAG GACTCCCTCG ACGCCATCGA ACGCTTGTTT AAATCAGACA TCGAAGCGAA GCAGGTCGCG GCCATTATTT TCGAACCGGT GCAGGGCGAG GGCGGTTTCA ACGTTGCGCC AAAAGAGCTG GTTGCCGCCA TTCGCCGCCT GTGCGACGAG CACGGTATTG TGATGATTGC CGATGAAGTG CAAAGCGGCT TTGCGCGTAC CGGCAAACTG TTTGCGATGG ATCATTACGC CGATAAGCCG GACTTAATGA CGATGGCGAA AAGCCTCGCG GGCGGGATGC CGCTTTCGGG TGTGGTCGGT AACGCGAATA TTATGGACGC GCCCGCGCCG GGCGGGCTTG GCGGCACCTA CGCCGGGAAT CCGCTGGCGG TGGCTGCCGC GCACGCGGTG CTCAACATTA TCGACAAAGA GTCACTCTGT GAGCGCGCCA TGCAGTTGGG GCAGCGTCTG ACGAAAACCC TGATTGATGC CAAAGAAAAC GTTCCGGCCA TCGCGGCGGT ACGTGGTCTG GGCTCGATGA TTGCGGCAGA ATTTAACGAC CCGCAAACGG GCGAGCCGTC AGCCGCCATT GCGCAAAAAA TTCAGCAACG CGCGCTGGCG CAGGGACTGC TTCTACTGAC CTGTGGCGCA TACGGCAACG TGATTCGTTT CCTGTATCCG CTGACCATCC CGGATGCGCA ATTCGATGCG GCAATGAAAA TTTTGCAGGA TGCGCTGAGA GATTAA
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Protein sequence | MSNNEFHQRR LSATPRGVGV MCNFFAQSAE NATLKDVEGN EYIDFAAGIA VLNTGHRHPD LVAAVEQQLQ QFTHTAYQIV PYESYVTLAE KINALAPVSG QAKTAFFTTG AEAVENAVKI ARAHTGRPGV IAFSGGFHGR TYMTMALTGK VAPYKIGFGP FPGSVYHVPY PSDLHGISTQ DSLDAIERLF KSDIEAKQVA AIIFEPVQGE GGFNVAPKEL VAAIRRLCDE HGIVMIADEV QSGFARTGKL FAMDHYADKP DLMTMAKSLA GGMPLSGVVG NANIMDAPAP GGLGGTYAGN PLAVAAAHAV LNIIDKESLC ERAMQLGQRL TKTLIDAKEN VPAIAAVRGL GSMIAAEFND PQTGEPSAAI AQKIQQRALA QGLLLLTCGA YGNVIRFLYP LTIPDAQFDA AMKILQDALR D
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