Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1010 |
Symbol | potF |
ID | 6967830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 1022434 |
End bp | 1023546 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643385024 |
Product | putrescine transporter subunit: periplasmic-binding component of ABC superfamily |
Protein accession | YP_002269524 |
Protein GI | 209397481 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.274464 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 0.285031 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCT TAAATAAAAA ATGGCTTTCG GGTCTGGTTG CGGGTGCTCT GATGGCCGTC TCTGTCGGCA CGCTCGCGGC TGAACAAAAA ACACTCCACA TTTATAACTG GTCTGATTAT ATCGCCCCCG ACACGGTGGC TAACTTTGAA AAAGAAACCG GTATTAAAGT CGTCTACGAT GTTTTCGACT CTAACGAAGT ACTGGAAGGC AAATTAATGG CCGGGAGCAC CGGCTTTGAC CTGGTGGTGC CGTCAGCAAG CTTTCTTGAA CGCCAGCTGA CAGCGGGAGT TTTCCAGCCG CTGGATAAAA GCAAATTGCC GGAGTGGAAG AATCTCGACC CGGAACTGCT GAAGTTGGTC GCCAAACACG ATCCCGACAA TAAATTTGCT ATGCCCTATA TGTGGGCGAC GACCGGGATT GGCTATAACG TCGATAAAGT CAAAGCGGTG CTGGGCGAAA ACGCGCCCGT CGATAGCTGG GACTTGATCC TCAAGCCTGA AAATCTGGAA AAACTGAAAA GCTGCGGTGT ATCTTTCCTC GATGCGCCAG AAGAAGTTTT TGCTACCGTG CTGAATTATC TCGGCAAAGA TCCCAACAGC ACTAAAGCGG ATGATTACAC CGGACCGGCT ACCGATCTGC TGTTAAAGCT GCGCCCGAAC ATTCGTTATT TCCATTCATC TCAATATATT AACGACCTGG CAAACGGCGA TATTTGCGTC GCTATCGGCT GGGCAGGTGA TGTCTGGCAG GCGTCAAACC GCGCGAAGGA AGCGAAGAAT GGCGTGAATG TCTCGTTCTC GATTCCAAAA GAAGGGGCGA TGGCGTTCTT TGATGTATTC GCCATGCCTG CGGATGCCAA AAATAAAGAC GAAGCCTATC AGTTCCTGAA TTACCTGCTG CGTCCTGATG TGGTGGCACA TATCTCTGAC CATGTGTTCT ATGCTAACGC CAATAAAGCA GCCACGCCGC TGGTGAGTGC GGAAGTCCGT GATAACCCGG GTATTTATCC GCCTGCGGAT GTCCGCGCGA AGTTGTTCAC TCTGAAAGTA CAGGCTCCGA AAATCGACCG TGTGCGCACC CGCGCGTGGA CCAAAGTGAA GAGCGGAAAA TAA
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Protein sequence | MTALNKKWLS GLVAGALMAV SVGTLAAEQK TLHIYNWSDY IAPDTVANFE KETGIKVVYD VFDSNEVLEG KLMAGSTGFD LVVPSASFLE RQLTAGVFQP LDKSKLPEWK NLDPELLKLV AKHDPDNKFA MPYMWATTGI GYNVDKVKAV LGENAPVDSW DLILKPENLE KLKSCGVSFL DAPEEVFATV LNYLGKDPNS TKADDYTGPA TDLLLKLRPN IRYFHSSQYI NDLANGDICV AIGWAGDVWQ ASNRAKEAKN GVNVSFSIPK EGAMAFFDVF AMPADAKNKD EAYQFLNYLL RPDVVAHISD HVFYANANKA ATPLVSAEVR DNPGIYPPAD VRAKLFTLKV QAPKIDRVRT RAWTKVKSGK
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