Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_0785 |
Symbol | speF |
ID | 6968971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 799870 |
End bp | 802077 |
Gene Length | 2208 bp |
Protein Length | 735 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 643384812 |
Product | ornithine decarboxylase |
Protein accession | YP_002269318 |
Protein GI | 209398410 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACAAAA TGTCAGAATT AAAAATTGCC GTTAGTCGTT CTTGCCCGGA TTGTTTTTCC ACTCATCGTG CATGCGTGAA TATAGACGAA AGTAATTATA TTGACGTTGC CGCCATTATT TTATCAGTCA GTGATGTTGA ACGTGGAAAA CTCGATGAAA TAGACGCTAC TGGCTATGAC ATTCCTGTTT TTATTGCAAC GGAAAATGAA GAACGTATAC CAGCAGAATA TCTTTCACGT ATTTCTGGTG TCTTCGAACA TGGAGAAGCA CGCAAAGAAT TTTATGGTCG TCAGTTAGAA ACCGCTGCCA GCCATTATGA AACTCAACTG CGCCCACCTT TCTTTCGCGC ACTGGTCGAT TATGTCAATC AGGGCAACAG CGCATTTGAC TGCCCCGGTC ATCAGGGCGG CGAATTTTTC CGTCGCCATC CGGCGGGGAA TCAGTTTGTG GAATACTTTG GTGAGGCGCT GTTCCGTGCC GACTTGTGCA ACGCCGACGT AGCGATGGGC GATCTGCTGA TTCACGAAGG CGCGCCATGC ATTGCACAGC AACATGCAGC AAAAGTGTTT AATGCCGATA AAACCTACTT CGTTTTAAAT GGCACTTCAT CTTCTAACAA AGTGGTTTTA AACGCCCTGC TGACACCGGG TGATCTGGTG CTATTTGACC GCAATAACCA TAAGTCTAAC CACCACGGGG CCTTGCTACA GGCTGGTGCA ACACCGGTTT ATCTGGAAAC AGCACGTAAC CCGTATGGTT TTATCGGTGG TATTGATGCA CACTGCTTCG AAGAAAGTTA TCTGCGTGAA CTGATTACAG AAGTTGCACC GCAACGGGCA AAAGAGGCGC GTCCGTTCCG CCTCGCTGTG ATTCAGCTAG GCACCTACGA CGGTACGATT TATAACGCCC GCCAGGTGGT GGATAAAATT GGTCATCTGT GTGACTACAT CCTGTTTGAT TCCGCATGGG TCGGCTATGA ACAGTTTATT CCGATGATGG CTGACTGTTC GCCGCTGTTG CTGGATCTTA ATGAGAACGA TCCGGGTATT CTGGTTACGC AATCCGTACA TAAACAGCAG GCTGGTTTTT CTCAAACTTC ACAAATCCAT AAAAAAGACA GCCACATCAA AGGGCAACAG CGTTATGTAC CGCACAAACG CATGAACAAC GCCTTTATGA TGCATGCCTC CACCAGCCCG TTCTATCCGC TGTTTGCCGC ACTGGATATC AACGCCAAAA TGCATGAAGG TGTCAGCGGT CGTAATATGT GGATGGATTG TGTGGTAAAT GGCATTAATG CCCGCAAACT GATCCTCGAT AACTGTCAGC ATATTCGTCC GTTCATACCT GAACTGGTGG ATGGTAAACC CTGGCAGTCG TATGAAACAG CGCAAATTGC GGTTGATCTG CGCTTCTTCC AGTTTGTACC AGGTGAGCAC TGGCATTCTT TTGAAGGCTA TGCAGAGAAT CAATACTTTG TTGATCCGTG CAAACTGTTG CTGACAACCC CAGGTATTGA TGCACGTAAC GGCGAATATG AAGCGTTCGG TGTACCCGCG ACGATTCTTG CTAACTTCCT GCGCGAAAAT GGCGTAGTGC CGGAAAAATG CGATCTTAAC TCCATCCTCT TCCTGCTGAC TCCGGCAGAA GATATGGCCA AACTTCAGCA ACTTGTTGCC CTGCTGGTAC GCTTCGAAAA ACTGCTGGAA TCTGATGCGC CGCTGGCGGA AGTGCTACCT TCCATCTACA AACAGCATGA AGAGCGCTAC GCCGGTTATA CCCTTCGTCA GTTGTGCCAG GAAATGCATG ATTTGTATGC CCGCCACAAC GTGAAACAAC TGCAAAAAGA GATGTTCCGT AAGGAACACT TCCCACGCGT CAGCATGAAT CCGCAAGAAG CTAACTACGC CTATTTACGC GGTGAAGTGG AGCTGGTTCG TCTGCCGGAT GCAGAAGGCC GTATCGCTGC CGAAGGTGCG CTTCCTTATC CTCCGGGTGT GCTGTGTGTT GTTCCGGGTG AAATCTGGGG TGGTGCTGTT TTGCGTTACT TCAGCGCTCT GGAAGAAGGG ATCAACCTGC TGCCAGGTTT TGCACCGGAG CTGCAGGGTG TCTATATCGA AGAACATGAT GGTCGTAAGC AAGTTTGGTG CTATGTCATC AAGCCTCGTG ATGCGCAAAG CACCCTGCTG AAAGGGGAAA AATTATGA
|
Protein sequence | MNKMSELKIA VSRSCPDCFS THRACVNIDE SNYIDVAAII LSVSDVERGK LDEIDATGYD IPVFIATENE ERIPAEYLSR ISGVFEHGEA RKEFYGRQLE TAASHYETQL RPPFFRALVD YVNQGNSAFD CPGHQGGEFF RRHPAGNQFV EYFGEALFRA DLCNADVAMG DLLIHEGAPC IAQQHAAKVF NADKTYFVLN GTSSSNKVVL NALLTPGDLV LFDRNNHKSN HHGALLQAGA TPVYLETARN PYGFIGGIDA HCFEESYLRE LITEVAPQRA KEARPFRLAV IQLGTYDGTI YNARQVVDKI GHLCDYILFD SAWVGYEQFI PMMADCSPLL LDLNENDPGI LVTQSVHKQQ AGFSQTSQIH KKDSHIKGQQ RYVPHKRMNN AFMMHASTSP FYPLFAALDI NAKMHEGVSG RNMWMDCVVN GINARKLILD NCQHIRPFIP ELVDGKPWQS YETAQIAVDL RFFQFVPGEH WHSFEGYAEN QYFVDPCKLL LTTPGIDARN GEYEAFGVPA TILANFLREN GVVPEKCDLN SILFLLTPAE DMAKLQQLVA LLVRFEKLLE SDAPLAEVLP SIYKQHEERY AGYTLRQLCQ EMHDLYARHN VKQLQKEMFR KEHFPRVSMN PQEANYAYLR GEVELVRLPD AEGRIAAEGA LPYPPGVLCV VPGEIWGGAV LRYFSALEEG INLLPGFAPE LQGVYIEEHD GRKQVWCYVI KPRDAQSTLL KGEKL
|
| |