Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_0132 |
Symbol | gcd |
ID | 6967745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 143188 |
End bp | 145578 |
Gene Length | 2391 bp |
Protein Length | 796 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643384209 |
Product | quinoprotein glucose dehydrogenase |
Protein accession | YP_002268732 |
Protein GI | 209400840 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4993] Glucose dehydrogenase |
TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.556262 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAATTA ACAATACAGG CTCGCGACGA TTACTCGTCA CGCTAACAGC CCTTTTTGCA GCGCTTTGCG GGCTGTATCT ACTCATTGGC GGAGGCTGGC TGGTCGCGAT TGGCGGCTCC TGGTACTACC CTATCGCTGG CCTTGTGATG CTCGGCGTCG CCTGGATGCT GTGGCGCAGT AAACGTGCCG CGCTTTGGCT ATACGCCGCC CTGCTGCTCG GCACCATGAT TTGGGGCGTC TGGGAAGTTG GTTTCGACTT CTGGGCGCTG ACTCCGCGCA GCGATATTCT GGTCTTCTTC GGCATCTGGC TGATCCTGCC GTTTGTCTGG CGTCGCCTGG TCATTCCTGC CAGCGGCGCA GTTGCCGCAC TGGTGGTGGC ACTGCTGATT AGCGGTAGTA TCCTGACCTG GGCCGGATTT AACGATCCGC AGGAAATCAA CGGCACCTTA AGCGCCGATG CCACACCTGC GGAAGCTATC TCACCCGTTG CCGATCAGGA CTGGCCTGCC TATGGTCGCA ATCAGGAAGG TCAACGCTTT TCACCTCTGA AACAAATTAA CGCCGATAAC GTCCATAATC TGAAAGAAGC CTGGGTGTTC CGTACTGGCG ATGTGAAGCA GCCGAACGAT CCGGGCGAAA TCACCAATGA AGTGACGCCG ATTAAAGTGG GCGACACCCT TTACCTGTGT ACCGCTCACC AGCGCCTGTT TGCGCTCGAT GCCGCCAGCG GCAAAGAGAA ATGGCATTAC GATCCTGAGC TGAAAACTAA CGAGTCTTTC CAGCACGTAA CCTGCCGTGG CGTCTCTTAT CATGAAGCCA AAGCAGAAAC GGCTTCGCCG GAAGTGATGG CGGATTGCCC GCGTCGTATC ATTCTTCCGG TCAATGATGG TCGCCTGATT GCGATTAACG CTGAAAACGG CAAGCTGTGC GAAACCTTCG CCAATAAAGG CGTGCTCAAT CTGCAAAGCA ATATGCCAGA CACCAAACCG GGTCTGTATG AACCGACTTC GCCACCGATT ATCACCGATA AAACCATCGT GATGGCAGGT TCAGTTACCG ATAACTTCTC AACCCGCGAA ACGTCTGGCG TGATCCGTGG TTTTGATGTC AACACCGGGG AGCTGCTGTG GGCTTTTGAT CCGGGCGCGA AAGATCCGAA CGCAATCCCG TCTGACGAAC ACACCTTTAC CTTTAACTCG CCAAACTCGT GGGCACCAGC GGCCTATGAC GCGAAGCTGG ATCTGGTGTA TCTGCCGATG GGCGTGACCA CGCCGGATAT CTGGGGCGGT AACCGCACAC CGGAACAGGA ACGTTATGCC AGCTCGATTC TGGCGCTGAA TGCCACAACC GGGAAATTGG CGTGGAGCTA CCAGACCGTT CACCACGACC TGTGGGATAT GGATCTTCCG GCACAGCCGA CGCTGGCGGA CATCACCGTT AATGGTCAGA AAGTGCCAGT TATTTACGCT CCGGCGAAAA CCGGCAACAT TTTTGTGCTC GATCGTCGTA ATGGCGAACT GGTGGTTCCG GCACCGGAAA AACCGGTTCC CCAAGGTGCT GCCAAAGGCG ATTACGTTAC CCCTACTCAA CCATTCTCGG AACTGAGCTT CCGTCCGACG AAAGATTTGA GCGGTGCGGA TATGTGGGGA GCCACCATGT TTGACCAACT GGTGTGCCGC GTGATGTTCC ACCAGATGCG CTATGAAGGC ATTTTCACGC CGCCATCTGA ACAGGGCACG CTGGTCTTCC CGGGTAACCT GGGAATGTTT GAATGGGGCG GGATTTCCGT TGATCCAAAT CGTGAAGTGG CAATTGCCAA CCCAATGGCA CTGCCGTTTG TTTCGAAACT GATCCCACGC GGTCCGGGTA ACCCGATGGA GCAGCCGAAA GATGCCAAAG GCACGGGTAC GGAATCCGGC ATTCAGCCAC AGTACGGTGT ACCGTATGGT GTCACGCTCA ACCCGTTCCT CTCACCATTT GGTCTGCCAT GTAAACAGCC AGCATGGGGT TATATCTCGG CGCTGGATCT GAAAACTAAT GAAGTGGTGT GGAAGAAACG TATTGGTACG CCGCAGGACA GTATGCCGTT CCCGATGCCT GTACCGGTGC CGTTCAATAT GGGTATGCCG ATGCTGGGCG GGCCAATCTC CACGGCGGGT AACGTGCTGT TTATCGCCGC TACGGCAGAT AACTACCTGC GCGCTTACAA CATGAGCAAC GGTGAAAAAC TGTGGCAGGG TCGTTTACCA GCGGGTGGTC AGGCGACGCC AATGACCTAT GAAGTGAATG GTAAGCAGTA TGTGGTGATC TCCGCAGGCG GTCACGGTTC ATTTGGTACG AAGATGGGTG ACTATATTGT GGCTTATGCG CTGCCGGATG ATGTGAAGTA A
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Protein sequence | MAINNTGSRR LLVTLTALFA ALCGLYLLIG GGWLVAIGGS WYYPIAGLVM LGVAWMLWRS KRAALWLYAA LLLGTMIWGV WEVGFDFWAL TPRSDILVFF GIWLILPFVW RRLVIPASGA VAALVVALLI SGSILTWAGF NDPQEINGTL SADATPAEAI SPVADQDWPA YGRNQEGQRF SPLKQINADN VHNLKEAWVF RTGDVKQPND PGEITNEVTP IKVGDTLYLC TAHQRLFALD AASGKEKWHY DPELKTNESF QHVTCRGVSY HEAKAETASP EVMADCPRRI ILPVNDGRLI AINAENGKLC ETFANKGVLN LQSNMPDTKP GLYEPTSPPI ITDKTIVMAG SVTDNFSTRE TSGVIRGFDV NTGELLWAFD PGAKDPNAIP SDEHTFTFNS PNSWAPAAYD AKLDLVYLPM GVTTPDIWGG NRTPEQERYA SSILALNATT GKLAWSYQTV HHDLWDMDLP AQPTLADITV NGQKVPVIYA PAKTGNIFVL DRRNGELVVP APEKPVPQGA AKGDYVTPTQ PFSELSFRPT KDLSGADMWG ATMFDQLVCR VMFHQMRYEG IFTPPSEQGT LVFPGNLGMF EWGGISVDPN REVAIANPMA LPFVSKLIPR GPGNPMEQPK DAKGTGTESG IQPQYGVPYG VTLNPFLSPF GLPCKQPAWG YISALDLKTN EVVWKKRIGT PQDSMPFPMP VPVPFNMGMP MLGGPISTAG NVLFIAATAD NYLRAYNMSN GEKLWQGRLP AGGQATPMTY EVNGKQYVVI SAGGHGSFGT KMGDYIVAYA LPDDVK
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