Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECD_01250 |
Symbol | topA |
ID | 0 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21(DE3) |
Kingdom | Bacteria |
Replicon accession | CP001509 |
Strand | + |
Start bp | 1317418 |
End bp | 1320015 |
Gene Length | 2598 bp |
Protein Length | 865 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | DNA topoisomerase I |
Protein accession | ACT43139 |
Protein GI | 253977469 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.856005 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAAAG CTCTTGTCAT CGTTGAGTCC CCGGCAAAAG CCAAAACGAT CAACAAGTAT CTGGGTAGTG ACTACGTGGT GAAATCCAGC GTCGGTCACA TCCGCGATTT GCCGACCAGT GGCTCAGCTG CCAAAAAGAG TGCCGACTCT ACCTCCACCA AGACGGCTAA AAAGCCTAAA AAGGATGAAC GTGGCGCTCT CGTCAACCGT ATGGGGGTTG ACCCGTGGCA CAATTGGGAG GCGCACTATG AAGTGTTGCC TGGTAAAGAG AAGGTCGTCT CTGAACTGAA ACAACTGGCT GAAAAAGCCG ACCACATCTA TCTCGCAACC GACCTTGACC GCGAAGGGGA AGCCATTGCA TGGCACCTGC GGGAAGTGAT TGGGGGTGAT GATGCGCGCT ATAGCCGAGT GGTGTTTAAC GAAATTACTA AAAACGCGAT CCGCCAGGCA TTTAACAAAC CGGGTGAGCT GAATATTGAT CGTGTTAATG CCCAGCAGGC GCGTCGCTTT ATGGACCGCG TGGTGGGGTA TATGGTTTCG CCGCTGCTAT GGAAAAAGAT CGCTCGTGGT CTGTCTGCCG GTCGTGTGCA GTCGGTGGCG GTTCGCCTGG TGGTCGAGCG TGAGCGTGAA ATTAAAGCGT TCGTGCCGGA AGAGTTCTGG GAAGTCGATG CCAGCACGAC CACGCCATCT GGTGAAGCGT TGGCGTTACA GGTGACTCAT CAGAACGACA AACCGTTCCG TCCGGTCAAC AAAGAACAAA CTCAGGCTGC GGTAAGTCTG CTGGAAAAAG CGCGCTACAG CGTGCTGGAA CGTGAAGACA AACCGACAAC CAGTAAACCT GGCGCTCCTT TTATTACCTC TACGCTGCAA CAAGCTGCCA GCACCCGTCT TGGATTTGGC GTGAAAAAAA CCATGATGAT GGCGCAGCGT TTGTATGAAG CAGGCTATAT CACTTACATG CGTACCGACT CCACTAACCT GAGTCAGGAC GCGGTAAATA TGGTTCGCGG TTATATCAGC GATAATTTTG GTAAGAAATA TCTGCCGGAA AGTCCGAATC AGTACGCCAG CAAAGAAAAC TCACAGGAAG CGCACGAAGC GATTCGTCCT TCTGACGTCA ATGTGATGGC GGAATCGCTG AAGGATATGG AAGCAGATGC GCAGAAACTG TACCAGTTAA TCTGGCGTCA GTTCGTTGCC TGCCAGATGA CCCCAGCGAA ATATGACTCC ACGACGCTGA CCGTTGGTGC GGGCGATTTC CGCCTGAAAG CACGCGGTCG TATTTTGCGT TTTGATGGCT GGACAAAAGT GATGCCTGCG TTGCGTAAAG GCGATGAAGA TCGCATCTTA CCAGCAGTTA ATAAAGGCGA TGCTCTGACG CTCGTTGAAC TTACACCAGC CCAGCACTTT ACCAAGCCGC CAGCCCGTTT CAGTGAAGCA TCGCTGGTTA AAGAGCTGGA AAAACGCGGT ATCGGTCGTC CGTCTACCTA TGCGTCGATC ATTTCGACCA TTCAGGATCG TGGCTACGTG CGAGTAGAAA ATCGTCGTTT CTATGCGGAA AAAATGGGCG AAATCGTCAC CGATCGCCTT GAAGAAAATT TCCGCGAGTT AATGAACTAC GATTTTACCG CGCAGATGGA AAACAGCCTC GACCAGGTGG CAAATCACGA AGCAGAGTGG AAAGCTGTAC TGGATCACTT CTTCTCGGAT TTCACCCAGC AGTTAGATAA AGCTGAAAAA GATCCGGAAG AGGGTGGTAT GCGCCCGAAC CAGATGGTTC TGACCAGCAT TGACTGCCCG ACTTGTGGTC GCAAAATGGG GATTCGCACA GCGAGCACCG GGGTATTCCT TGGCTGTTCT GGCTATGCGC TGCCGCCGAA AGAGCGTTGC AAAACCACCA TTAACCTGGT GCCGGAAAAC GAAGTGCTGA ACGTGCTGGA AGGCGAAGAT GCTGAAACCA ACGCGCTGCG CGCAAAACGT CGTTGCCCGA AATGCGGCAC GGCGATGGAC AGCTATCTCA TCGATCCGAA ACGTAAGTTG CATGTCTGTG GTAATAACCC AACCTGCGAC GGTTACGAGA TCGAAGAGGG CGAATTCCGC ATTAAAGGTT ATGACGGCCC GATCGTTGAG TGTGAAAAAT GTGGCTCTGA AATGCACCTG AAAATGGGGC GTTTCGGTAA ATACATGGCC TGCACCAACG AAGAGTGTAA AAACACACGT AAGATTTTAC GTAACGGCGA AGTGGCACCA CCGAAAGAAG ATCCGGTGCC ATTACCTGAG CTGCCGTGCG AAAAATCAGA TGCTTATTTC GTGCTGCGTG ACGGTGCTGC CGGTGTGTTC CTGGCTGCCA ACACTTTCCC GAAATCGCGT GAAACGCGTG CGCCACTGGT GGAAGAGCTT TATCGCTTCC GCGACCGTCT GCCGGAAAAA CTGCGTTATC TGGCCGATGC GCCACAGCAG GATCCGGAAG GTAATAAGAC CATGGTTCGC TTTAGCCGTA AAACCAAACA GCAATATGTC TCTTCGGAAA AAGACGGAAA GGCGACTGGC TGGTCAGCAT TTTATGTTGA TGGCAAATGG GTTGAAGGAA AAAAATAA
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Protein sequence | MGKALVIVES PAKAKTINKY LGSDYVVKSS VGHIRDLPTS GSAAKKSADS TSTKTAKKPK KDERGALVNR MGVDPWHNWE AHYEVLPGKE KVVSELKQLA EKADHIYLAT DLDREGEAIA WHLREVIGGD DARYSRVVFN EITKNAIRQA FNKPGELNID RVNAQQARRF MDRVVGYMVS PLLWKKIARG LSAGRVQSVA VRLVVERERE IKAFVPEEFW EVDASTTTPS GEALALQVTH QNDKPFRPVN KEQTQAAVSL LEKARYSVLE REDKPTTSKP GAPFITSTLQ QAASTRLGFG VKKTMMMAQR LYEAGYITYM RTDSTNLSQD AVNMVRGYIS DNFGKKYLPE SPNQYASKEN SQEAHEAIRP SDVNVMAESL KDMEADAQKL YQLIWRQFVA CQMTPAKYDS TTLTVGAGDF RLKARGRILR FDGWTKVMPA LRKGDEDRIL PAVNKGDALT LVELTPAQHF TKPPARFSEA SLVKELEKRG IGRPSTYASI ISTIQDRGYV RVENRRFYAE KMGEIVTDRL EENFRELMNY DFTAQMENSL DQVANHEAEW KAVLDHFFSD FTQQLDKAEK DPEEGGMRPN QMVLTSIDCP TCGRKMGIRT ASTGVFLGCS GYALPPKERC KTTINLVPEN EVLNVLEGED AETNALRAKR RCPKCGTAMD SYLIDPKRKL HVCGNNPTCD GYEIEEGEFR IKGYDGPIVE CEKCGSEMHL KMGRFGKYMA CTNEECKNTR KILRNGEVAP PKEDPVPLPE LPCEKSDAYF VLRDGAAGVF LAANTFPKSR ETRAPLVEEL YRFRDRLPEK LRYLADAPQQ DPEGNKTMVR FSRKTKQQYV SSEKDGKATG WSAFYVDGKW VEGKK
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