| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_2436 |
|---|
| Symbol | |
|---|
| ID | 4663608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | + |
|---|
| Start bp | 2834443 |
|---|
| End bp | 2835369 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639820684 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_967879 |
|---|
| Protein GI | 120603479 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.437878 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.907986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGACC AGATGCCCGT ACAGCAGCAT GGTCTGCTGG TGCTGGACAA GCCCAGTGGC
CCCTCGTCAG CCCAGTGCAT CTCGAAGGTG AAGCGGCTGG GTCAGAAGAA GATAGGTCAT
GCGGGGACTC TCGACCCCAT GGCTGGTGGT GTGTTGCTCG TCCTGCTGGG ACATGCGACG
AAAATTTCAG GTCACCTCAT GGCCGATGGC GAGAAGGTGT ATGCAGGCAC CCTGCGCCTT
GGCGAGACGA CCGACACTTG GGACGCCGAA GGTACGGTGA CAGCCACCGC GCCTTGGCAC
CATGTGACAG AAGCCGACGT GCGCGCCATC GTCGACTCGT GGCTGGGTTC CTCCGAGCAG
GAGGTGCCCC CCTATTCTGC CGCAAAGCAT CAGGGCCAGC CCCTGTACAA GCTTTCGCGT
GCAGGCCGCG AGACCCCGGT GAAGACGAAG ACCGTCGAGA TTTCCCTTGC GGAGGTCGTA
TGGTGCGACC TGCCGCATGT ACGTTTCCGG GTAAGATGCA GTTCCGGCAC CTACATACGG
TCCCTGGCCC ACAGCTTGGG GATACGTCTA GGGTGCGGCG CCGTGCTTAC GGAACTGACC
CGGGAGTACA GTCATCCGTT CGGACTGGAC ATGGCGCATA CCCTTGATGC CGTGCTCGCA
GAACCCGGAC GCCTCGCAGA GCGGGTCATC CCCATCACGC ACGCGTTGCC GCACTGGCCA
AAGGTCGGCA TCAGCCCCCA GCAGGAGGCG AGCGTACGCA ACGGGATACC ACTGCCCTAT
CAACCCGAGA TGGTGGCGGA CATGCCATTC ATGGAAGGTG TGAAGGCGAT ACTGCTCGAC
ACGCGCGAGG TGCCCGTGGC TCTTGTCGAA ACGGCCATCG TAGGTGGCAG ACAGGTCTGG
GCCGTACTCC GGGGACTGTG GAGTTAA
|
|---|
| Protein sequence | MFDQMPVQQH GLLVLDKPSG PSSAQCISKV KRLGQKKIGH AGTLDPMAGG VLLVLLGHAT
KISGHLMADG EKVYAGTLRL GETTDTWDAE GTVTATAPWH HVTEADVRAI VDSWLGSSEQ
EVPPYSAAKH QGQPLYKLSR AGRETPVKTK TVEISLAEVV WCDLPHVRFR VRCSSGTYIR
SLAHSLGIRL GCGAVLTELT REYSHPFGLD MAHTLDAVLA EPGRLAERVI PITHALPHWP
KVGISPQQEA SVRNGIPLPY QPEMVADMPF MEGVKAILLD TREVPVALVE TAIVGGRQVW
AVLRGLWS
|
|---|
| |