| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1102 |
|---|
| Symbol | |
|---|
| ID | 4662837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 1339904 |
|---|
| End bp | 1342375 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639819331 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_966549 |
|---|
| Protein GI | 120602149 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.813916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.354207 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAGCGA ACGCCAGAGA TGCACGACGC CGGAACCGTT CGGCCACTGG CAGGAACAGT
TCAGGCAGCC CTGGCGGTGC ACAGGCCGTG GTGCCCGCTG CCGCCCCTCC GCGTCACGCC
CATGCGGGAA CGGAACCGGC GCGGGCGACC ACGATGAGCC TGCTCGCCGT CGCCCCGGAA
GAGGACATAC ACGCCCTTGC CCGCACCCTG CACCATGCGG GCATCGCAGC CGCCTATACC
CTTGCCACGA CGCCGCACAC ACTGTCGTCA GCCCTCATCG ACGAACCGTG GGACATGGTG
CTGGTCCGCC CCGGCTTGCC GGGTCTTAGC CCGACCGACG CCCTGCATCT CGCGCGGGCG
GCACGCAGCG ACTTGCAGTG TGTCGCCCTG CTGCACCGGG AAGAGACCGA AAGCGCAATG
GCTCTTCTGA AGGGCGGCAT GGACGATGTC GTCGTCGCAG ACGACCCCAT ATTGCCTGCG
CACATGGCCC GCCTCGCCCG CGAGGCGGCA CGCAGGCGCG AACACTCGCG CCTGTGGCGT
GACATGCGCC ATGACGTCCA GCAATGGCGA GGCATGGTCG ACAACACCCT GCTGGGCATC
TTCCGCTGCC AGCCATGGGG CGACCTTGTG CATGCCAACG CCGCCTTCGC CCACATCCTC
GGGCACGACG ACCCCGCAGC ACTCGTACAG CAACTCCGCA CGGAGAATCG TTCCTTTCTC
GACAAGAACC GGATGGAGCA CTTCCTCTCC CGGCTTTCCG AACGAGACTG CATCGACGAC
TTCGAAGCCG ACCTCCATAA GGTCGACGGT ACGTTGACCC GGGTCATGCT CCATGCACGC
ATCATCCGCG ACGACAACGG CGAAGCCCTC TCCATCGAAG GCACGATGGA AGACATCGAG
CGGCGCAAAT CGTTCGAAGC GGTCATCATC AATGCCAAAC AGGAGTGGGA GAAGACGTTC
GACAGCGTTC CCGACGTCAT CATCATCTTC TCACCGGAAT TGCGGATACG GCGGTGCAAC
AAGGCACTGG GCCGCCTGCT GGGCCTTCAC CCGCGCGACC TCGTGGGACG GCGCTGTGAA
GAGGTGCTCG GTTCCGGCAG TTCTCCGAAC GATGCCTGCG CGTTGCTGCG TTCGCAAGAG
AGTGCCGGTT TCAGCACCGG TGAACTGCAC CTGCCCTTTC TTGGCGGCGA CTTTCTCGTG
ACCCTCTCGC CACTGCAAAC GGGACAGAAC GACGAACCCG CCGGGGACAT CGTCATGGTC
GCCCACGACA TCAGCAACCG CAAACGCCTC GAAAGCCAGC TGCGGCAGGC GCAGAAGATG
GAGGCCATCG GCACGCTGGC AGGTGGCATC GCCCATGACT TCAACAACAT CCTTGGCGTC
ATGATGGGCT ACACGGAGAT GAGTCTCGAC CAGGCGGATG AGGACAGCCC CATGCACAGA
AGGCTGAGTG AAGTGCTCGA AGCCGGCAAG CGGGCGCGAG ACATCATCCA CCAGATACTC
ACCATGAGCA GACAGGAAGA ACCTTCGCGG CAGATGCTCT CGCTTTCGTC TCCCGTGCGC
GAGACCCTGC GCCTTCTGCG GGCGACACTC CCCGCCAACG TCGACATCCG GGTGGATATC
GAGGATACCG CCCCCGTCCT CGCCAACCAG AGTCAGATAC AGCAGGTCGT CATGAATCTC
TGCACCAACG CCGCCCACGC CATGCGCGCG AAGGGCGGGG TGCTCACCGT GGCACTCGAC
GCCGTCGACC TGAGTGCCGA AGAGGCCCAG CAACGCTCTC TCGAAGGCCC CGCGACCTTT
GCCCGCCTAC GGGTACGCGA CACAGGGCAC GGTATCCCCT CGGAGATACG CGAGAACATC
TTCGACCCGT TCTTCACCAC CAAGAAGCCG GATGAGGGAA CGGGCATGGG GCTTGCCCTT
GTCCACGGCA TCGTCACCGG ACACGGCGGG CATGTATCGT TCACCTCCAC GGCGGGTTTC
GGCACCGAAT TCGAGATACT TCTCCCTGTC GTCTCCGGCC ATGCGACGAA GGCGGAAGGA
GACCCGGACA ACCTGCCCAA GGGGGGGGGC GAAGTGCTGG TGGTCGACGA TGAGGCGTCC
CTTGCCCTCG TCATGGGCGA GATGCTCGAA AGCATGGGCT ACAGGGCTGA CATCGCCACA
TCACCTTTCG AAGCCCTCGA ACGTTTCTCC GAGTCGCCGT CACGATGGGC CTTCGTGGTC
ACCGACCAGA CCATGCCCGG CATGACCGGC ATGGAACTCG CCGCCCATAT GCTGGGCGTC
GCATCCAGCA TCCGGGTCAT CCTGTGTACG GGGTTCAGTG AGGGACTGAC GGAAGAGGCG
GCACACAAGG CAGGCATAGC GAGACTGCTG TACAAGCCCG TCCTGCGCGC CGACATGGCA
GAGGCGGTGA TGGGCCTTGC GGTGTCAGCG GGGCAGGGCG AGTCGTCCGA AGCCCCGGTC
ACCGTGGCAT GA
|
|---|
| Protein sequence | MTANARDARR RNRSATGRNS SGSPGGAQAV VPAAAPPRHA HAGTEPARAT TMSLLAVAPE
EDIHALARTL HHAGIAAAYT LATTPHTLSS ALIDEPWDMV LVRPGLPGLS PTDALHLARA
ARSDLQCVAL LHREETESAM ALLKGGMDDV VVADDPILPA HMARLAREAA RRREHSRLWR
DMRHDVQQWR GMVDNTLLGI FRCQPWGDLV HANAAFAHIL GHDDPAALVQ QLRTENRSFL
DKNRMEHFLS RLSERDCIDD FEADLHKVDG TLTRVMLHAR IIRDDNGEAL SIEGTMEDIE
RRKSFEAVII NAKQEWEKTF DSVPDVIIIF SPELRIRRCN KALGRLLGLH PRDLVGRRCE
EVLGSGSSPN DACALLRSQE SAGFSTGELH LPFLGGDFLV TLSPLQTGQN DEPAGDIVMV
AHDISNRKRL ESQLRQAQKM EAIGTLAGGI AHDFNNILGV MMGYTEMSLD QADEDSPMHR
RLSEVLEAGK RARDIIHQIL TMSRQEEPSR QMLSLSSPVR ETLRLLRATL PANVDIRVDI
EDTAPVLANQ SQIQQVVMNL CTNAAHAMRA KGGVLTVALD AVDLSAEEAQ QRSLEGPATF
ARLRVRDTGH GIPSEIRENI FDPFFTTKKP DEGTGMGLAL VHGIVTGHGG HVSFTSTAGF
GTEFEILLPV VSGHATKAEG DPDNLPKGGG EVLVVDDEAS LALVMGEMLE SMGYRADIAT
SPFEALERFS ESPSRWAFVV TDQTMPGMTG MELAAHMLGV ASSIRVILCT GFSEGLTEEA
AHKAGIARLL YKPVLRADMA EAVMGLAVSA GQGESSEAPV TVA
|
|---|
| |