Gene Dvul_0888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_0888 
Symbol 
ID4663861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp1093753 
End bp1095258 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content62% 
IMG OID639819111 
Productlysyl-tRNA synthetase 
Protein accessionYP_966336 
Protein GI120601936 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1190] Lysyl-tRNA synthetase (class II) 
TIGRFAM ID[TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGAAA GCCTCGAAGC CCGCGACGAG CTGAACGAGG TGGTGAAGAA CCGCGTCGTG 
AAGACGTGCG AACTTCTCGA CGCCGGAGTG TCGGCCTACC CGAACGGTTT CATCAAACAG
CACGACATCG CACCGGTACT TGCCGAGTAC GAGGGGCTCG ATGCTGATGA GCTCGAAACG
GTGGACGCCG CCTTCACGAT GGCGGGGCGC ATCGTGTCGC ACCGTTCGTT CGGCAAGGTG
GCCTTCTTCC ATATAATGGA TCGCACGGGG CGCATGCAGT GCTATGCCGC GCGTGAGGAA
CTTGGCGAAG AAGCCTACAA GACCTTCAAG AAGCTCGACA TCGGCGATAT CGTCGGCGTG
AGCGGAAGGC TCTTTCGCAC CAAGACGGGC GAGCTCACGC TCTCCTGTAC CGAGGTGCGC
CTGCTGACCA AGTCCATCCG GCCCCTCCCC GAGAAGTATC ACGGCCTCAA GGACGTGGAA
ATCCGCTATC GCCAGCGCTA CGTCGACCTC ATCGTCACGC CGCGGGCCCG CGACATCTTC
CGCAAGCGCA CGATCATCGT CCGTGAGTTC AGGCGCTTCC TCGAAGCCCG CGGTTTCATG
GAAGTCGAGA CGCCGATGAT GCAGGCCATC CCCGGCGGCG CCACGGCAAA GCCGTTCGTC
ACCTTCCACA ACGCGCTGGA TATGCAGCTC TACATGCGCA TCGCGCCAGA GCTCTATCTG
AAGCGCCTGC TCGTGGGCGG TTTCGAGAAG GTCTTCGAGA TCAACCGCAA CTTCCGCAAC
GAGGGCATAT CCACCCAGCA CAACCCTGAA TTCACCATGT GTGAGTTCTA CTGGGCCTAT
GCCACGTTCG AAGACCTGAT GGACCTCACC GAGGAGCTGT TCTCGCACAT CGCGCGCGAG
GTCTGTGGCT CTTCGGTCAT CACCTATCAG GGGCAGGAGG TCGACCTCAC GCCCGGCAAG
TGGGTGCGTC TGACCTTCCA CGAGTCGCTT GAGAAGGTGG GTGGGCATTC CCCCGAGTTC
TACAACGACT ACGAGAAGGT TCGTGCCTAC GTGCGTGAGC GTGGCGAGAA GGTGCTTCAG
GGCGAGAAGC TGGGCAAGCT ACAGGCCAAG CTGTTCGACC TCGACGTGGA ACCCCGGCTC
ATCCAGCCCA CGTTCATCTA CCACTACCCG ACCGACATCT CGCCCCTGTC GCGCAGGAAC
GAGCAGAACC CGGACGTCAC CGACCGTTTC GAACTGTTCA TCACCGGGCG CGAACTCGCC
AACGCCTTCT CTGAATTGAA CGACCCCGTC GACCAGCGCA TGCGCTTCGA GGACCAGGTC
AAGGAGAAGG AGGCTGGTGA CGACGAGGCG CATTTCATGG ACGAGGACTA CCTGCGCGCG
CTCGAATACG GTATGCCGCC CGCGGCTGGG CAGGGCGTGG GTATCGACCG CCTCGTCATG
CTGCTGACCG ACTCGCCCTC CATCCGCGAG GTCATCCTCT TTCCGCTGCT GAAGCCGGAG
AGCTGA
 
Protein sequence
MLESLEARDE LNEVVKNRVV KTCELLDAGV SAYPNGFIKQ HDIAPVLAEY EGLDADELET 
VDAAFTMAGR IVSHRSFGKV AFFHIMDRTG RMQCYAAREE LGEEAYKTFK KLDIGDIVGV
SGRLFRTKTG ELTLSCTEVR LLTKSIRPLP EKYHGLKDVE IRYRQRYVDL IVTPRARDIF
RKRTIIVREF RRFLEARGFM EVETPMMQAI PGGATAKPFV TFHNALDMQL YMRIAPELYL
KRLLVGGFEK VFEINRNFRN EGISTQHNPE FTMCEFYWAY ATFEDLMDLT EELFSHIARE
VCGSSVITYQ GQEVDLTPGK WVRLTFHESL EKVGGHSPEF YNDYEKVRAY VRERGEKVLQ
GEKLGKLQAK LFDLDVEPRL IQPTFIYHYP TDISPLSRRN EQNPDVTDRF ELFITGRELA
NAFSELNDPV DQRMRFEDQV KEKEAGDDEA HFMDEDYLRA LEYGMPPAAG QGVGIDRLVM
LLTDSPSIRE VILFPLLKPE S