Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_2163 |
Symbol | |
ID | 7174085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | - |
Start bp | 2696715 |
End bp | 2699951 |
Gene Length | 3237 bp |
Protein Length | 1078 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643540683 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_002436574 |
Protein GI | 218887253 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 82 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATCGC GTTTCTTCAT CCATCGCCCC ATCTTCGCGT GCGTGATCTC CATCGTGATC ATGCTGGCGG GGTTCATGGC CATGCGAGCG CTGCCCATCG CGCAGTACCC GGAAATCGTT CCGCCGCAGG TCATCGTCTC CGCCGTGTAT CCCGGCGCCA GCCCCGAGGT CATCGCGGCC ACGGTGGCCT CGCCGCTGGA ACAGCAGATC AACGGCGTGG ACGGCATGCT GTACATGAAC TCGGTCAGCG CCGGTAACGG CCAGATGACC ATTTCCGTGT CCTTCGCCGT GGGCACCGAC CCCGACCAGG CCACCATCAA CGTCAACAAC CGCGTGCAGG CCGCCACCGC ATCCCTGCCC GAGGAAGTGC GCCGCCAGGG CGTCACCGTG ACCAAGCGGT CGCCCTCCAT CCTCCAGGTG GCCAACATGT TCTCGCCCGA CGGGCGGTAC GATTCGGTCT ACATCAGCAA CTACGTCCTG GTGAACGTGG TGGACGAGCT GAAGCGCCTT CCGGGCGTTG GCGATGCCTC CATCTTCGGC GCCAAGGACT ATTCCATGCG CATCTGGCTG CACCCGGACA AGCTGGCCCA GCTCAAGCTG ACCCCCGGCG ACGTGGCGCT GGCCATCCGC GAGCAGAACG CCCAGTTCGC CGCCGGGCGC ATCGGCCAGG AACCGTCCAG CAGCCCGCTG GAACTGAACT ACCTGGTCAC CACCAAGGGG CGCCTGACCA ACCCCGAGGA ATTCGAAAAC ATCATCCTGC GGGCAGAGCC CGACGGCTCC ACCCTGCTGC TCAAGCACGT GGCCCGTGTG GAACTGGGCG CCAAGGACTA CGACGTCCGC ACCCAACTCA ACGGCAAGCC CACCGTGGCC GTGGGCGTGT TCCTGACGCC CGGCGCCAAC GCGCTGGAAA CGGCAGACCG CGTGGCCGCA AAGATGCAGG AGCTGTCGCA GCGCTTCCCC GACGGCATCA GCTACTCCAT CCCCTACGAC ACCACCAAGT TCGTGCGCAT CTCCATCACA GAGGTGGTGC ACACCCTGGT GGAAGCCATG GTGCTGGTGT TCCTGGTGGT GTTCCTGTTC CTGCAGAACT GGCGGGCCAC GCTCATACCC TGCCTTGCGG TGCCGGTGTC CATCGTGGGC ACCTTCGCGG GCATGTACGC GCTGGGCTTC TCCATCAACA CATTGACATT GTTCGGCCTG GTGCTGGCCA TCGGCATCGT GGTGGACGAC GCCATCGTGG TGCTGGAAAA CGTGGAACGC ATCATGTCCT CCGAGCGGCT GACGCCGCGC AAGGCCACCA TCAAGGCCAT GGAGGAAGTG ACCGGGCCGG TCATCGCCAT CGTGCTGGTG CTGTGCTCGG TGTTCGTCCC CGTGGCCTTC ATGGGCGGCC TTGCCGGGCA GATGTACAAG CAGTTCGCCA TCACCATCGC GGTGTCGGTG GTCATCTCCG GCCTGGTGGC CCTGACGCTG ACACCCGCCC TGTGCGCGCT GATGCTGAAG CCCGGCCATC ATGAGCCGCC CGCGTTCTTC CGCTGGTTCA ACAACTGGTT CGAACGCGTC ACCCACCGCT ACACCGGCGG GGTGGCCTTC CTGATCCGCC GCGCGGGCCT TGCGCTGGTG CTGTTCGCCT GCCTGGGCGG CGCCACCTGG CATCTCTTCC AGGTGGTGCC CGGCGGCCTC GCCCCGGACG AAGACCAGGG CTACATCATC GGCCTGTCCA TCCTGCCCGA CGGGGCCAGC CTGCAACGCA CCCGCGTGGT GGCCGACCTG ATGGACAAGA GCCACATGGA AGACCCCCGC GTGGCCAACC TGATCACCCT GACCGGCTAC GACCTGCTGT CCGGGGTGCC CAAGCCCAAC TTCGTCACCT CGTTCGTGCC GCTGAAACCG TGGGACGAGC GCAAGGGCGC GGGGCAGTCT TCGTTCGACT ACGCCCGCAA GGTGTTCGGC GTGGGCATGG GCGTGCCGGA AGGCATCGTG CTGGCCTTCA ACCCGCCGCC CATCTCGGGC ATGAGCAACA CCGGCGGCTT CGAACTGTAC GTGCAGAACC GCGGCGAAGG CGACAGCAAG GCCCTGGCGG GCATGGTGGG CAAGTTCATC GCCGCCGCCG CCAAGCGGCC TGAACTGGCG GGCGTGCAGA CCACCTTCAG CGCCAACGCG CCACAGCTGT TCATCAGCCT GGACCGCAAC AAGGCAAAGG CCCTGGGCGT GCCGGTGAAC ACCATCTTCG ACACCATGCA GGCCACCTTT GGCGCCAGCT ACGTGAACGA CTTCAACAAG TTCGGTCGTA CCTTCAAGGT GCAGATGCAG TCCGAGGCCG ACTTCCGCGC CCGCCCGGCG GACGTGGCCA ACGTGTTCGT GCGGGCCACC TCGGGCGAGA TGATCCCCCT CACCTCGCTG GTGGACGTGC AGGAAGTGAC CGGCCCCGAA GTGGTGGAGC GCTTCAACGT GTTCCCCGCC GCCAAGGTGG TGGGCGGCCC CGCCCCCGGG TACAGCTCCG GCCAGGCCAT AGCCGCCATC GAAGAAGTGG CGGCGGAGGT CATGCCGCCG GAATACACCC TGGCCTGGTC CGGTTCCGCC TACCAGGAAA AGCAGACCGG CGGCTCGTCG TCGCTGGTGT TCGTGCTGGG CCTGGTCATG GTCTTCCTGA TCCTGGCGGC GCAGTACGAA AAGTGGTCGC TGCCGCTGGC GGTCATCATG GCCGTGCCGT TCGCCCTGTT CGGGGCCATC ACCGCAGTGT GGCTGCGCGG CCTTGCCAAT GACGTGTACC TGCAGATCTC GCTGGTCACG CTCATCGGCC TTGCGGCCAA GAACGCCATC CTCATCGTGG AATTCGCGGT GATCAAGCGG CACGAGGGGC TTTCGCTGGT GGAATCGGCC ATCGAGGCCG CCCGCCTGCG CTTCCGCCCC ATCATCATGA CCTCGCTGGC CTTCGTGCTG GGCTGCGTGC CGCTGGCCAT CAGCAGCGGC GCGGGCGCGG CCAGCCGTCA CTCCATCGGC ACCGGCGTCA TCGGCGGAAT GCTGGCGGCG ACCTTCATCG CCACCTTCTT CATCCCCATG TTCTACCGGC TGATCATGGG CGTGAGCGAA CGCATGCGCG GCACCGAGGC AATGCGCACC ATGGCCGTGG GCAAGTACTG CGAAGAGGAA CGCCACTCGG CCTTCGAAGA CCTGCCGCCG GACTACGTGG CGGGCGCGGG CGACGACGCC TGCAACAAGG AGAAGCGCCA TGATTAG
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Protein sequence | MISRFFIHRP IFACVISIVI MLAGFMAMRA LPIAQYPEIV PPQVIVSAVY PGASPEVIAA TVASPLEQQI NGVDGMLYMN SVSAGNGQMT ISVSFAVGTD PDQATINVNN RVQAATASLP EEVRRQGVTV TKRSPSILQV ANMFSPDGRY DSVYISNYVL VNVVDELKRL PGVGDASIFG AKDYSMRIWL HPDKLAQLKL TPGDVALAIR EQNAQFAAGR IGQEPSSSPL ELNYLVTTKG RLTNPEEFEN IILRAEPDGS TLLLKHVARV ELGAKDYDVR TQLNGKPTVA VGVFLTPGAN ALETADRVAA KMQELSQRFP DGISYSIPYD TTKFVRISIT EVVHTLVEAM VLVFLVVFLF LQNWRATLIP CLAVPVSIVG TFAGMYALGF SINTLTLFGL VLAIGIVVDD AIVVLENVER IMSSERLTPR KATIKAMEEV TGPVIAIVLV LCSVFVPVAF MGGLAGQMYK QFAITIAVSV VISGLVALTL TPALCALMLK PGHHEPPAFF RWFNNWFERV THRYTGGVAF LIRRAGLALV LFACLGGATW HLFQVVPGGL APDEDQGYII GLSILPDGAS LQRTRVVADL MDKSHMEDPR VANLITLTGY DLLSGVPKPN FVTSFVPLKP WDERKGAGQS SFDYARKVFG VGMGVPEGIV LAFNPPPISG MSNTGGFELY VQNRGEGDSK ALAGMVGKFI AAAAKRPELA GVQTTFSANA PQLFISLDRN KAKALGVPVN TIFDTMQATF GASYVNDFNK FGRTFKVQMQ SEADFRARPA DVANVFVRAT SGEMIPLTSL VDVQEVTGPE VVERFNVFPA AKVVGGPAPG YSSGQAIAAI EEVAAEVMPP EYTLAWSGSA YQEKQTGGSS SLVFVLGLVM VFLILAAQYE KWSLPLAVIM AVPFALFGAI TAVWLRGLAN DVYLQISLVT LIGLAAKNAI LIVEFAVIKR HEGLSLVESA IEAARLRFRP IIMTSLAFVL GCVPLAISSG AGAASRHSIG TGVIGGMLAA TFIATFFIPM FYRLIMGVSE RMRGTEAMRT MAVGKYCEEE RHSAFEDLPP DYVAGAGDDA CNKEKRHD
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