Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_2042 |
Symbol | |
ID | 7173961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 2532982 |
End bp | 2534574 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643540559 |
Product | NusB/RsmB/TIM44 |
Protein accession | YP_002436453 |
Protein GI | 218887132 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCCC GGCGTCCCCA ACCCCACGCA AAGGGTGCCC CCCTGCCTCC GGCCCGTGCC GCTGCCCTTG CCGCCCTGGA CAAGGTGCTG CGCAAGGGGC AGGAGGTGCA GGCCGCACTG GACGCCGTGC TTGCGGATGC TGCCGCACGC AATGAAGCGA GCGCACGCGC AAACGCAAGC AAGGCATCTG CCAGCAATAG CGCCACACAC TCCGCAAACA CCTCCTCGAC CACACCAGAC GGCTCCGCAT TGCGGCATGC CGGAATTTCG CGTCAGGACG CCGCCCTGGC CACGGAACTC GTCTACGGGT ATCTGCGGTC GGAAATCCGC ATTTCGTGGC TCCTGCGCCG CTTCCTGACG GCCCCGGAGA AGTTGCCGCA GGAGGCCTTG CTGACCCTTG GCGTGGCCGC GCACGAAATC GTGCACCTTG ACCGCATCCC CGACTACGCG GCGGTGGACT GGGCCGTCAC CCACATCCGC CAGCGCTTCG GCCCCGGTCT CGGCAAGCTG GCCAACGCGG TGCTGCGCAA CGTGGCCCGG CTGGGCGACG ATGCCCGCAA CGCGGAGATG TACCACGCCG ACCTGCCGGA ACCGCGCGAT TTCCTGTCCG TGCACCATGC CGCACCGCGC TGGCTGGTGG ACCTGTGGTG CGATGCGTAC GGGCCCGGCC GCGCCGCCGA CCTGCTGGCT GCCAGTGCCC AGGCTCCGGC CCCGGCGGTG CGCGTCAATG CCGCCCGTTC CGGCTGGCAG GCGCTGCGTG ACCAGTTGAT TGCGGATCAC GGCGGCACCG CCTGCGGCCA TGCCGGAGTG GTCTTTCCCG TCGGCGGATT TCCGGCGGAG GTTGCCGCGC TGGAACGCGC GGGGCTGCTG TCGCGACAGG GCGCGGCATC GCAGGAAGTG CTGGACGCAT TGCTCCCGGA TACCTGGGAA GGCCCGGTGT GGGATGCCTG CTGCGGACGC GGAGGCAAGG CGCTGGCCCT GCTGGAGCGC GGCGTGGACG TGCGCCTGTG CAGCGACCCC AATGCGGGCC GCCTGCGTGG CCTGCGCGCC GATGCCGAAC GGCTGGGGCT TACCGTGCCC GCCATCGTCC GTGCCTCCGC AACGCAACCG CCCTGCGCAA CGGACAGCCC CAGCGCCGCA GGCGGACCGG CTGGCCCGGC CCTGCCAGTT CAGCCAGTTC AGCCAGTCAC ACCAGACACG TCGGGCACGC CACACACGCC GGGCACAAAT GACGGAACGA CCAGCTCGTG CGCCCTCCGC ACCATTCTCA TTGATGCGCC CTGTTCCGGA CTGGGCACCC TTTCCCGCCG CCCGGACATC AAGCTGCGCC GCTCCCCCGC CGACCTCGAC GCGCTTGCCG CGTTGCAAGG CAGGATACTT GATGCCGCCC TGTCCGTGCT GCCCACGGGT GGTCGGCTGG TGTACATCAC CTGCACCCTG AACCCCGCCG AGAACGAGGC GCAGGTCGAA CGTCTGTTGT CCCTGACCGG TGCCGCCAGC GCCACCCCTG TCACTGTTGA AGTGCAGCAC ACCACCCCCG CCGACACCCC GGCCCGTGAA TTCTTTTTTG GCGTGGTGTT GCGCAAGGGG TAA
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Protein sequence | MSARRPQPHA KGAPLPPARA AALAALDKVL RKGQEVQAAL DAVLADAAAR NEASARANAS KASASNSATH SANTSSTTPD GSALRHAGIS RQDAALATEL VYGYLRSEIR ISWLLRRFLT APEKLPQEAL LTLGVAAHEI VHLDRIPDYA AVDWAVTHIR QRFGPGLGKL ANAVLRNVAR LGDDARNAEM YHADLPEPRD FLSVHHAAPR WLVDLWCDAY GPGRAADLLA ASAQAPAPAV RVNAARSGWQ ALRDQLIADH GGTACGHAGV VFPVGGFPAE VAALERAGLL SRQGAASQEV LDALLPDTWE GPVWDACCGR GGKALALLER GVDVRLCSDP NAGRLRGLRA DAERLGLTVP AIVRASATQP PCATDSPSAA GGPAGPALPV QPVQPVTPDT SGTPHTPGTN DGTTSSCALR TILIDAPCSG LGTLSRRPDI KLRRSPADLD ALAALQGRIL DAALSVLPTG GRLVYITCTL NPAENEAQVE RLLSLTGAAS ATPVTVEVQH TTPADTPARE FFFGVVLRKG
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