Gene DvMF_1974 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_1974 
Symbol 
ID7173893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand+ 
Start bp2441451 
End bp2442404 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content58% 
IMG OID643540491 
ProductCRISPR-associated protein, Csd2 family 
Protein accessionYP_002436385 
Protein GI218887064 
COG category[L] Replication, recombination and repair 
COG ID[COG3649] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01595] CRISPR-associated protein, CT1132 family
[TIGR02589] CRISPR-associated protein, Csd2 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones87 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCAGC CCATCAGCAA GCGGTACGAA TTCGTGCTCT TTTTCGACGT GGAGAACGGC 
AACCCCAACG GCGACCCGGA CGCGGGCAAC CTGCCCCGGC TGGACCCGGA AACCAGCCAT 
GGCCTTGTGA CCGATGTATG TTTGAAACGC AAGGTGAGAA ATTACATAAG CATAGCTAAA 
GGCAACACAG AACCCCACCT CATCTTTATT AAAGAAAAAT CCATCCTCAA TTCAACGATT 
CGCCGACCAT ACGAAGAGGA CCCCGCAACT AAAGCCTGCT TGCAGGAATG GCTTGCCTAC 
AAAAAAAATA AAAAAACTCC GAAACCCAAA GAACACTATG AAGACCTCGC TCAAAAATGG 
CTGTGTCAAA AGCACTATGA CATCCGTGCC TTTGGCGCTG TAATGAGCAC TGGAGAAGAA 
GAAAAGAATG AAGATATATC CAGCAAAATC CGAATGAGAG CAGGCCAGGT GCGCGGCCCG 
GTGCAGATGG CCTTTGCCCG CAGCGTGGAG CCGGTGGTGC CGCTGGACAT CTCCATCACC 
CGCATGGCCG TGGCCACCGA ACGCGAGGCG GAAGCGCAGG AAGGCGACAA CCGCACCATG 
GGCCGCAAGT CCATCATTCC CTACGGCCTG TACCGGGCGG AAGGCTTCGT TTCCGCGCAC 
CTGGCCGCCC AGACCGGTTT CACCGACGAC GACCTTGAAC TGTTCTGGCA GGCGCTGGAA 
AGCATGTTCG AGCACGACCA TTCCGCCGCG CGCGGCAAGA TGGCATCCCG CGCCCTGATC 
GTCTTCGAGC ATGAAGGTGC CCTTGGCAAC GCGCCCGCGC ACAAGCTGTT CGAGCTGGTG 
GCCTCGCCCA GGGCCGAAGG TTCGACCGGA CCGGCCCGCG CCTTCGAAGA CTATGCCATC 
ACCGTGAATG ATGCCGGGGC GCCCGCCGGT GTGCGGGTGA TCCGGCGGCT GTAG
 
Protein sequence
MSQPISKRYE FVLFFDVENG NPNGDPDAGN LPRLDPETSH GLVTDVCLKR KVRNYISIAK 
GNTEPHLIFI KEKSILNSTI RRPYEEDPAT KACLQEWLAY KKNKKTPKPK EHYEDLAQKW 
LCQKHYDIRA FGAVMSTGEE EKNEDISSKI RMRAGQVRGP VQMAFARSVE PVVPLDISIT 
RMAVATEREA EAQEGDNRTM GRKSIIPYGL YRAEGFVSAH LAAQTGFTDD DLELFWQALE 
SMFEHDHSAA RGKMASRALI VFEHEGALGN APAHKLFELV ASPRAEGSTG PARAFEDYAI 
TVNDAGAPAG VRVIRRL