Gene DvMF_1931 details

Gene Information

• Locus tag: DvMF_1931
• ID: 7173849
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris str. 'Miyazaki F'
• Kingdom: Bacteria
• Replicon accession: NC_011769
• Strand: -
• Start bp: 2381132
• End bp: 2383054
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643540447
• Product: TRAP dicarboxylate transporter, DctM subunit
• Protein accession: YP_002436342
• Protein GI: 218887021
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 94
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTGAAA GAAACACATT TTCCTGGGCA ACCGCCAACG AGTGGCTGGA AAAACCCTTC 
CTGGTAGCGG GGCTGATGGT CATGATCCTG GCCATCACCT ACCAGACGGG CTTCCGCTAT 
TCCATGGCCA CGATTAACGA AATGCTCAAC GACGCGGGCA CGGTGGCCTT CCTGGCCCGG 
TTCGTCGACG TCGAGGGGCT GAAAGCGGGG CTGCAACGCA TCATCGGCTG GTCGGTGTGG 
TCCGAGGAAC TTTCCCGCTA CCTGTTCATC TGGATTTCAT ACCTTGCCGT TCCCCTGGCC 
ATCATGAAGC GCAGCAACAT CCGCGTGGAC GTGCTGTGCG CCAAGCTGCC GCCGCGCGCG 
CAGGGCATGG CCTGGGTGGT GGTGGACGTG TGCACCCTCG TGCTGACGGG GGCGCTCTGC 
TACATGGGCT TCGGCCATGT GCAGATGCAG ATCGCCATGC CCCAGACCAC GCCTGCCATG 
GGCATCAAGT ATTTCATCCC GTACATGATC CTGCCGGTGG GCTTTTTCCT CATGACCCTG 
CGCACCGTGC AGGATCTGGT GCGACAGGCG CGCACCATGC CCGCCCTGGA CGTGGTGGGC 
GGGGTGGCCT GCGGCTTGCT GCTGTTTCTG CCGGTGCTGC TTTCCGACCA GTGGAGCGCG 
GTGTGGCTGC TGTTCGGCTA CTTCGTGCTG TTCCTGCTGG TGGGTGTGCC CATTGCCTTT 
TCGCTGGGGC TTGCCACCAT CGCCACGGTG CTCGGCGCGG GTACGCTGCC CCTGGAATAC 
CTTGCGCAGA TCGCCTTCGT TTCCATCGAC AGCTTTCCGA TCCTGGCCAT TCCGTTCTTC 
ATCGCGGCCG GGGTGTTCAT GGGCGCGGGC GGCCTTTCGC GGCGGCTGCT GGCCCTTGGC 
GATGAACTGG TGGGCGCCCT GCCCGGCGGC ATGGCGCTGG CCACCATCGT GACCTGCATG 
TTTTTTGCCG CCATCAGCGG TTCCGGCCCG GCCACGGTGG CTGCCATCGG CAGCATCACC 
ATTCCGGCCA TGGTCGAGCG TGGTTACGAC AAGTTCTTCG CGGCCGCCGT GGTGGCGTCC 
GCCGGGTGCA TCGGCGTGAT GATCCCACCG AGCAACCCCT TCGTGGTGTA TGGCGTGGCC 
GCGCAGGCCT CGGTGGGCAA GCTGTTCCTG GCGGGCATCG TGCCCGGCGT GCTGTGCGGG 
CTGGCCCTCA TGGCGGTGGC CTATTACATC TCGCTGAAGA AGGGCTGGCG CGGCGAGGCG 
CGGCACCGCG ACTTCCGCTC GGTGATGCAG GCCATGTGGG AAGCCAAGTG GGCGCTGCTG 
GTCCCGGTCA TCGTGCTGGG CGGCATCTAC GGCGGCATCA TGACCCCCAC CGAGGCGGCG 
GCGGTGTCCG CCCTGTACGG CATGATCGTG GGCCTGTTCA TCTACCGCGA GATCACCTGG 
CGCCGGATGT GGGACTGCAT GGTCGAATCG GCGCAGACGT CGTCGGTGAT CATCGTGCTG 
ATGGCCATGG CCACCCTGTT CGGCAACATC ATGACCATCG AGCAGGTGCC CGACCACATC 
GCGGCCATGA TCCTGGGCGT GACCAGCAAC AAGATCGCCA TCCTGCTGCT GATCAACGTG 
TTCCTGCTGT GGGTGGGCAC CTTCATGGAG GCCCTGGCGG CCATCGTGAT CATCACTCCC 
ATCCTGCTGC CGCTGGTGAC GCAGGTGGGC GTTGACCCCA TCCACTTCGG GGTGATCATG 
GTGGTGAACC TGGCCATCGG CTTCATCACG CCGCCGGTGG GGGTTAACCT GTTCGTGGCC 
AGCAGCATCA GCAAGGTGAG CATCGGCGAC GTGGTGCGGG CGGCCTGGCC GTTCCTGCTG 
GTCATGATCG CCCTGCTCAT GGCCATCACC TACATTCCGG CCATCTCGCT GTGCCTGCTG 
TAG 

 

Protein sequence

MSERNTFSWA TANEWLEKPF LVAGLMVMIL AITYQTGFRY SMATINEMLN DAGTVAFLAR 
FVDVEGLKAG LQRIIGWSVW SEELSRYLFI WISYLAVPLA IMKRSNIRVD VLCAKLPPRA 
QGMAWVVVDV CTLVLTGALC YMGFGHVQMQ IAMPQTTPAM GIKYFIPYMI LPVGFFLMTL 
RTVQDLVRQA RTMPALDVVG GVACGLLLFL PVLLSDQWSA VWLLFGYFVL FLLVGVPIAF 
SLGLATIATV LGAGTLPLEY LAQIAFVSID SFPILAIPFF IAAGVFMGAG GLSRRLLALG 
DELVGALPGG MALATIVTCM FFAAISGSGP ATVAAIGSIT IPAMVERGYD KFFAAAVVAS 
AGCIGVMIPP SNPFVVYGVA AQASVGKLFL AGIVPGVLCG LALMAVAYYI SLKKGWRGEA 
RHRDFRSVMQ AMWEAKWALL VPVIVLGGIY GGIMTPTEAA AVSALYGMIV GLFIYREITW 
RRMWDCMVES AQTSSVIIVL MAMATLFGNI MTIEQVPDHI AAMILGVTSN KIAILLLINV 
FLLWVGTFME ALAAIVIITP ILLPLVTQVG VDPIHFGVIM VVNLAIGFIT PPVGVNLFVA 
SSISKVSIGD VVRAAWPFLL VMIALLMAIT YIPAISLCLL