| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0870 |
|---|
| Symbol | |
|---|
| ID | 7172759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | + |
|---|
| Start bp | 1047322 |
|---|
| End bp | 1049592 |
|---|
| Gene Length | 2271 bp |
|---|
| Protein Length | 756 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643539371 |
|---|
| Product | RNA binding S1 domain protein |
|---|
| Protein accession | YP_002435294 |
|---|
| Protein GI | 218885973 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 0.611113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCCAG AACTTCAGGC CACCGCTTCC GCCCCGGCAG CCCCAACCGG TCCGACCGCT
CCCGCGGTTG CGCCAGCCGC ACCGATCTCC GCAGCTCCGG CGGCCTTGGC CGCCGCGCTG
TCCCTGCCGG TATCCGGCGT CTCCGCCGTC ATGGCCCTGC TGGACGAAGG GGCCACCATT
CCCTTCATCG CCCGCTACCG CAAGGAAGCC ACTGGCAGCC TGGACGAGGT GCAGGTGGTC
GCCGTGCGTG ATGCCCTGGA AAAGGCGCGC GAACTGGACA AGCGACGGGC GGCGGTGCTG
GCATCGCTGG AGGAACGCGG CCTGCTCACC CCGCAACTGG CGGGGGCAGT GGCCGGTGCA
TCCACCCTCA CCGCGCTGGA GGACGTGTAC CTCCCCTACC GGCCAAAGCG CGTCACCCGC
GCGGAAAAGG CCCGGCGGCG CGGGCTGGCC CCGCTGGCGG AAGCACTGCG CACCGCGCGG
CCCACGGCGG ACGCCCTTGC GCTTGCCGCG CCCCATGTAA CGTCCCATGC CACCCCGGAA
GGCGCCGACC CGGAACTGGC CGTGCCCGAT GTGCAGGCCG CCCTGGCCGG TGCCCGGGAC
ATCCTGGCCG AAAACTGCGC GGAATCCGCC CCCCTGCGCG GAGCCCTGCG CGACCTGTTC
GTGCGGCGCG CCGTGCTGCG CGCCAGGGCC GTACCCGGCA AGGAGGCGGA AGGCGCCACC
TACGCCGACT GGTTCGGCCA CGAGGAACGC GCCGCCGCCA TGCCCTCGCA CCGCCTGCTG
GCCATGCTGC GCGGCGAACG CGAAGGCTTT CTTTCCGTGT CCGTGCGCCC CGACGACGCC
GAGGCCCTGG ACACCCTCCA CCGCCGGGCG GGCATCGCCG CCCCCGGCAC CGCCCCACGG
CCCGAAACCG CCGCAGGGCA GGTGGAGGCG GCCCTTGCCG ATGCCTGGAA GCGGCTGCTG
GCCCCATCGC TGGAAAACGA ACTGCGCACC GCCCTGCGCG AGCGGGCAGA GGCGCAGGCC
ATCGGGGTGT TCGCCGCCAA CCTGCGCGAA CTGATCATGG CCCCGCCCCT GGGCGGGCGC
CGCGTGCTGG CGCTGGACCC CGGCTGGCGC ACCGGGTCCA AGCTGGTCTG CCTGGACGCT
CAGGGCACCC TGCTGCACCA CGAGGTCATT CATCCGCTTA CGGGCGATGC CGGTGCGGAA
CGCGCCGCGC GCACCCTGCG CGACTGCTGC GCCAGGTACG CCATGGAGGT GGTGGCCGTG
GGCAACGGCA CCGCCGGGCG CGAGACGGAA GCCTTCGTGC GTAACGCGGG CCTGCCCGCC
GGAGTGGACG TAGTACTGGT GAACGAAACC GGGGCCTCGG TGTATTCCGC GTCCGAGGTG
GCCCGCCGCG AATTTCCGGA CCACGACCTG ACCGTGCGCG GGGCCGTTTC CATCGGGCGG
CGGCTGATGG ACCCGCTGGC GGAATTGGTG AAGATCGACC CGCGCTCGCT GGGCGTTGGC
CAGTACCAGC ACGACGTGGA CCAGGCCGCC CTGCGCCGCT CTCTGGACGA GGTGGTGGCC
TCGTGCGTCA ACGCAGTCGG CGTGGACGCC AACACCGCCA GCCCGGAACT GCTGGCCCAT
GTTTCCGGCA TCGGCCCGGT GCTGGCCCGC AACATTGTGG CCCACCGGGC GGAAAACGGC
CCCTTCCGCA ACCGCAGGGA TCTGCTGAAG GTGCCGCGCC TCGGCCCCAA GGCATTCGAA
CAGGCGGCAG GCTTTCTGCG CGTGCGCGGC GACAACCCGC TGGACGCCAG CGCGGTGCAC
CCGGAACGTT ATGCCCTTGT GGCCCGCATG GCGGCGGACC TCGGCTGCGC CCTGGCCGAC
CTGCTGCGCC GCGACGACCT GCGCAGGCGC ATCCGGCCCG AACAGTACGT TGCCGACGGC
GTGGGCCTGC CCACGCTCAC CGACATCCTG GCCGAACTGG CACGGCCGGG GCGCGACCCG
CGCCCGTCGT TCGCCCCGTT CCGCTTCGCC GAAGGGGTGC ATTCTCCCGA CGACCTGGAG
CCGGGCATGG TGCTGCCGGG CATCGTCACC AACGTCACCG CCTTCGGGGC ATTCGTGGAC
ATAGGGGTGC ACCGCGACGG GCTGGTGCAT GTCAGCCAGC TGTCCGACCG CTTCGTGCGC
GACCCGGCGG AAGTGGTGGC CCCGGGGCGC ACCGTGCGGG TGCGGGTGCT GGAGGTGGAC
CGGGCGCGTG GCAGGGTGAG CCTGACCATG AAGGGCGTGG ACCAGCAGTA G
|
|---|
| Protein sequence | MTPELQATAS APAAPTGPTA PAVAPAAPIS AAPAALAAAL SLPVSGVSAV MALLDEGATI
PFIARYRKEA TGSLDEVQVV AVRDALEKAR ELDKRRAAVL ASLEERGLLT PQLAGAVAGA
STLTALEDVY LPYRPKRVTR AEKARRRGLA PLAEALRTAR PTADALALAA PHVTSHATPE
GADPELAVPD VQAALAGARD ILAENCAESA PLRGALRDLF VRRAVLRARA VPGKEAEGAT
YADWFGHEER AAAMPSHRLL AMLRGEREGF LSVSVRPDDA EALDTLHRRA GIAAPGTAPR
PETAAGQVEA ALADAWKRLL APSLENELRT ALRERAEAQA IGVFAANLRE LIMAPPLGGR
RVLALDPGWR TGSKLVCLDA QGTLLHHEVI HPLTGDAGAE RAARTLRDCC ARYAMEVVAV
GNGTAGRETE AFVRNAGLPA GVDVVLVNET GASVYSASEV ARREFPDHDL TVRGAVSIGR
RLMDPLAELV KIDPRSLGVG QYQHDVDQAA LRRSLDEVVA SCVNAVGVDA NTASPELLAH
VSGIGPVLAR NIVAHRAENG PFRNRRDLLK VPRLGPKAFE QAAGFLRVRG DNPLDASAVH
PERYALVARM AADLGCALAD LLRRDDLRRR IRPEQYVADG VGLPTLTDIL AELARPGRDP
RPSFAPFRFA EGVHSPDDLE PGMVLPGIVT NVTAFGAFVD IGVHRDGLVH VSQLSDRFVR
DPAEVVAPGR TVRVRVLEVD RARGRVSLTM KGVDQQ
|
|---|
| |