Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0787 |
Symbol | |
ID | 7172676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | - |
Start bp | 944569 |
End bp | 946737 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 643539289 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_002435212 |
Protein GI | 218885891 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 0.239727 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGCA TCCAGGACGT CCTCGACAAG GTGGCGTCGG TCAACAAGAA CGCCGACCTT GCCCTCATAC AGAAGGCCTA CGTGTACGCG GCCGCCGCGC ACGCTGGCCA GACGCGCCTT TCGGGCGAGC CGTACCTGTC GCACCCGCTG GCGGTGGCCT ATTCGCTGGC CGAAATGCGT TTTGACGAGG CGGCCATAGC CGCCGGGCTG CTGCACGACA CGGTGGAAGA CACCACCGTG AGCATCGAGG ACATCGACAC CCTGTTCGGC GAAGAAGTGG CCGACGTGGT GGATGGCGTC ACCAAGATCA GCCAGATGAC CTTCGAGAGC AAGGAAGAGG CCCAGGCCGA GAACATCCGC AAGATGATCC TGGCCATGGC GCACGACATC AGGGTGCTCA TCGTCAAGCT GGCCGACCGC CTGCACAACA TGCGCACCCT GGGCTTCCAG AAGTCGCACA AGCAGAAGCT GATCGCCCAG GAAACCATGG ACATCTACGC CCCGCTGGCC AACCGGCTGG GGCTGCACCG CATCAAGCTG GAACTCGAGG ACCTGAGCTT CCGCTACCTG AAGCCCGACG TCTACGCCCA GATCGACGAA TGGCTGGACA CCAACCAGGT GGTGGAACGC CACTACATCG AACGGGTCAT CACCCGCATC CGCGAGATAC TGGAGAAGAA CGAGATCAAG GGCGAGGTGC GCGGGCGCAT CAAGCACAAG TACAGCATCT ACAAGAAGAT GGTGCAGCAG GACCTGACGC TGGACGACAT GCACGACATC ATCGCCTTCC GGGTGATCGT GGGCGACCTG CGCGACTGCT ACGCCGTGCT CGGCCTGATG CACGCCCAGT GGAAGCCGGT GCACGGGCGG TTCAAGGACT ACATCTCCAT GCCCAAGGCC AACGGGTACC GCAGCCTGCA CACCACGGTC ATCGGGCCGG AAGGCGAGCG CATGGAGATC CAGATACGCA CGGAGGAAAT GCACCGCCTG GCGGAACACG GCGTGGCCTC GCACTGGCTG TACAAGGAAG GCAGCCGGGT GAACCCGCGC GATCTCGAGC AGTTCACCTG GCTGCACGAG ATCCTGGACC GCCAGAAGAT GGAGACCGAT TCCAAGGAGT TCATGCAGTC GCTGCGCCTC GACCTGTTCA AGGACGAGGT GTACGTGTTC ACCCCGCGCG GCGACGTGAA GGAACTGCCC GAAGGGGCAA CCCCCATAGA TTTCGCCTAC CTGATCCATA CAGAGGTGGG CAACCACTGT GCCGGGGCCA AGGTCAACGG CAAGCTGGTG CCGCTGGGCA CCGCCCTGAA AAGCGGCGAC ACCATAGAGG TCATTACCGA CAACAGCCGC CGCCCCAGCC GCGACTGGCT GAAGTTCGTC AAGACGGCCA AGGCCCGCAG CCGCATCCAG CACTACATCC GCACCGAAGA GCGCGAACGG TCCATCGCGC TGGGGCGCGA GATGCTGGAA AAGGAAGGGC GGCGCATGGG CATCAACATC ACCAAGGCCC TGCGCGACGG TGACCTGCTG CCCGTGATCA AGGAACTTTC GCTGGGCAGC GTGGAAGACC TGCTGTCCAA CGTGGGCTAC GCCCGCTACA CCCCCAAGAA GGTGCTGAAG CGCCTGCTGC CCAAGGACGA GGAGGCCGCG GCGGAAGAAG CGGCCAAGGC AGCCGAGGCC AGCGCCGCCA GCGCCGCCAC GCGCGAGGCG AACCGCCGGG CGGACAGCGT GAGCATCAAG GGGGTGGACG ACATCCTGGT GCGCTTCGCC CGCTGCTGCA ACCCGCTGCC GGGCGACCCC ATCATCGGCT TCATCAGCCG GGGGCGCGGG GTGACGGTGC ACACCTCCGA CTGTGCCAAC GTGCAGACCA TGGAGCCGGA ACGGCTCATC TCGGTGTTCT GGGACGGGCA GGAGGACAAG CCCTACCCGG CGCGCATCCA TCTGGTGTGC CGCAACGAAA AGGGCGTGCT GGCCCAGATT ACCGCGCTGC TGGCCGAAGA GAACGTCAAC ATCGACTCCG GCAACATGCG CTCCATGGTG GACGGCAAGT CGGAAGTGGA CTTCACCGTG GAGGTGCGCG ACGTGGCGCA CCTGTACCGG GCGCTGGACA AGCTGCGCAA GCTGCCCACG GTGGTGGAGG TGCTGCGCTC CACCTCGACC ATGGAATAA
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Protein sequence | MIRIQDVLDK VASVNKNADL ALIQKAYVYA AAAHAGQTRL SGEPYLSHPL AVAYSLAEMR FDEAAIAAGL LHDTVEDTTV SIEDIDTLFG EEVADVVDGV TKISQMTFES KEEAQAENIR KMILAMAHDI RVLIVKLADR LHNMRTLGFQ KSHKQKLIAQ ETMDIYAPLA NRLGLHRIKL ELEDLSFRYL KPDVYAQIDE WLDTNQVVER HYIERVITRI REILEKNEIK GEVRGRIKHK YSIYKKMVQQ DLTLDDMHDI IAFRVIVGDL RDCYAVLGLM HAQWKPVHGR FKDYISMPKA NGYRSLHTTV IGPEGERMEI QIRTEEMHRL AEHGVASHWL YKEGSRVNPR DLEQFTWLHE ILDRQKMETD SKEFMQSLRL DLFKDEVYVF TPRGDVKELP EGATPIDFAY LIHTEVGNHC AGAKVNGKLV PLGTALKSGD TIEVITDNSR RPSRDWLKFV KTAKARSRIQ HYIRTEERER SIALGREMLE KEGRRMGINI TKALRDGDLL PVIKELSLGS VEDLLSNVGY ARYTPKKVLK RLLPKDEEAA AEEAAKAAEA SAASAATREA NRRADSVSIK GVDDILVRFA RCCNPLPGDP IIGFISRGRG VTVHTSDCAN VQTMEPERLI SVFWDGQEDK PYPARIHLVC RNEKGVLAQI TALLAEENVN IDSGNMRSMV DGKSEVDFTV EVRDVAHLYR ALDKLRKLPT VVEVLRSTST ME
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