Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0764 |
Symbol | |
ID | 7172652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 911777 |
End bp | 915262 |
Gene Length | 3486 bp |
Protein Length | 1161 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643539265 |
Product | UvrD/REP helicase |
Protein accession | YP_002435189 |
Protein GI | 218885868 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 0.715309 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCACGC CAACACTGAC GCAGATCAAG GCCTCCGCCG GATCGGGAAA GACCTACACC CTGACCCGGC GCTTCCTGTC GCTGCTGGCG GGCGCGCGCG ACGAGGACGG ACGGGCCTGC TCCCTGGCCG TGGAAGGCGG GCACTGCTGG CCGGACATCC TGGCGGTGAC CTTCACCAAC AAAGCCGCGT CGGAGATGAA GGAGCGGGTC ATCCGGCTGC TCAAGGAGCA TGCCCTTGCC GATCCGGCCC AAGCCCGGAA AGACGGTGGC GACGGGGCGT GGCCCCCGGC CCGCGCGGCC CGCTGGGTGG ACATCATCCT GCGGCGTTAC GGCGCGCTGA ACATCCGCAC CATCGACAGC CTGCTGACCA TGCTGGTGCG GCTGGCCGCG CTGGAGCTGT CCCTGCCGCC GGACTTCGAG CCGTCCTTTT CGCCCGACGA GTATTTCGAG CCGCTGTACG ACCTGATCCT GGACCGCGCC CGCCGGGGCG ATGCGCAGTT GCGGGATGAC GTGCGCGATG CCTGCCGCCT GTTGCTGTTC CACACCGATC TCAAGGGCTT CACCGTGGGG GCCGGGCTGC GGGTGCGCCT TTCGCAGCTG CTGCAACTGC ATCTGGCGGA AGGCGGCATG TCTGGCCCAG ACCCCTTAAA TGCCGGCCCC GCCCCGTTTG ATGCGGATGC CCCCCGTGGC GGCCTGCCCG ATGTGGATAC CGACGCCCTG GCCGCCAAGC TGGTCGCCAT TCATGCCGAC ATGCAGGATG CCACGGCCAC CCTGTCGCGC ATCCTGGCCG AAGAGCAGCT TTCCGCCGCC GCCAACCTGC ACAAGTTTCT GGACAAATGC GCGGAGAACA GCGCCTTTTC CCCGCTGTCC AAGTCCGCCT ATCTGGAAAA GGGGGGGCTG GACGACTGCC TGCTCAAGGC GTCCAAAGGC AAGGGCAGTG ACGACGCGCG CGCGGCCTTC GACGCCTGGC GCGACGCCTG CAACGACTTT GCGGTGCGCG GGCGGCTCAT CCAGCGCGCC TTGCAGGTGG CCCCGCTGGC CGGTCTGGCC CGCGCCATGG CCACGCACCT GCCCGACTTC CAGCGGCGCG AAGGCAAGCT GCCCCAGCCG CTCATTCCCC TGCACGCCCG CGACGTGCTT AACGGCGAGT TCGGCGTGTC CGAGGCCTTC TGCCGCATGG GCACGCGGCT TGCGCACGTC CTCATCGACG AATTCCAGGA CACCAGCCGC GACCAGTGGG CCGCCATCGA GCCGCTGGCC GTGGAATGCC TGTCGCGCGG CGGCGGGCTG ACCTGGGTGG GCGACGTGAA GCAGGCCATC TACGGCTGGC GCGGCGGCGA TTCCGCCCTG TTCGACGACA TCCTGGCATC CCCCGCGCTC ACCGCCATCG TTCCCGACCC GCAGCGTGAA ACCCTGCCCC GCAACTGGCG CAGCCGCGCG GCCATCGTGC GGCACAACAA CACCGTGTTC GCGCAACTGG ACGACCCGCT GCGCGCGCGG GGGGTGCTGT CGGCCATGCT GGGCGACAAG ACGCCCGACC ACGTGCTGGA CGAGGCCGCC GCATCGGTGG CGCGGGCCTT TGCCGGGGCG GCGCAGGAGG TTCCGGACAG GGATTCTGCC CAGGGCGGGC TGGTGCGCAT CGTGCCCGTA CACGGCGAGG ACAACGGCGA CCTGCGCGAC AAGGTGCGCC AGCAGTTGCG CGCGCTGTTC ATGGACGACT TGGCCGCCCG CCGACCGTGG CGCGACGTGG CCGTGCTGGT GCGCAAGAAC GACGAATCCG CGCAGGTGGC CTCGTGGCTC ATGGACTGGG GCGTGCCGGT GGTGACCGAG AACAGCCTGC GCCTGGCCGA CCATCCCCTT GTGACCCAGA CCGTGGCCCT GCTGGCCTTC CTGGACTACC CGCCCAACGC GCTGGCCCTG TGGGAGGTGC TGACCGGCGT GGAGTTGTTC GGCGGCATCA GCGGGCTTTC CGACCACGCG CTGCGCGACT GGCTGGCCGA CCGCTGCGCC CGCCCCGCCG ACGATCCGCG CGGCGGCAAG GGGCTGCTGG CCGATTTTCG GGCCACCTTC CCCGTGGCAT GGGAAACGTG GCTGGCCCCG TTCTACGCCC GCGCCGGGCT GATGGGCCCC TACGACACGG TGCGCGAAAT CTTCGAACGC TTCCGCGTGG CGCAGCGCCA CCCGGAGGAC ATCGGCTACG TGCGCCGCTT TCTGGAAGTG GTGCACAACG CCGAATCGCG CGGCCTCACT TCGCTGGCCA CCTTTCTGGA ATTCTGGGTC GAAAGCGGCG GCGAGGAAAA GGTGCCCATG CCGGAAGCCA TGGACGCCGT GCGGGTGATG ACCATGCACA AGTCCAAGGG GCTGGAATTC CCGGTGGTGG TGATTCCCTT CCACCACCAG CCCGACCGCA CCGACCCGCC GCTGGTGGTG GCGGAGCTGG ACGGACAGCC ACTGCTGGCC CCGCTGTGCC CGGAAATGGG CGACCGCTAC CACCACGCGC AGGCGGCTGC CGCCGCCGAA AAGCTGCACC TGCTCTACGT GGGCTGGACG CGGCCCGTGG ATGAACTGCA CGCCTACGTC ACCTCCACTC CGTTCGCCGA ACGGAGTTCG TCCCTGCTGG CCGGGGTACG CGCCCTGCTG ACCGGGTGCG CCATCGACAC CGGGCAGGAG TACGTGGCCG GGGTGGTGCC CCCGGCGCGG GCAACGGACG CGCACGCCGG TTCGGATACC GAGGACACGC GGGAAGCTCC ACGGGACGAA GCGGCGGCGC AGGCCGCACC GCCCGATGCT CCGCAGGCCG TGCCCGCTCC GTTACCTTCT CCGGCGCGTG CCCCGGCACC AGGCCCGCTA CCGGGGCACG CGGCAGCACA CGCACCGGAC CTGCCGTCCC CTGCCGCCCC GTGGCGGCCC ATGCAGTGGC TGCCGCGCCT GAAAATATTC CGCAACCAGC TGGAGGAATT CACCTTCACC GAGCGGCGGC GCGGCATGCT GGTGCATGCC TGCCTGGAAC AGCTGCGCCT TACCGGCACT CCGGACCAGG ACGCCGCCCG CGCCGTGGCC CACGGCATGC GCGCCTTCCC CCTGCCGGTG CCGGACCCGG AGGCCACGGC CAACGAACTC ACCGCCATGC TGGCATGGCT GGCGGCGTTG CCGCAGGCCG CACACTGGTT CACCCACGGC GTGCCGGAGC AGTCCATCAT GGACGCGCAG GGCAGCATCC ACCGCACCGA CCTCATGGTG GACGACGGAG AAACCTGCAC CGTGGTGGAA TGGAAGACGG GCCGTCCATC CGACGACCAT GTGGCGCAGG TGCGCCGCTA TCTGGGCCTG CTGGCCGAGG CCACCGGACG TGGTCCCGCC GGTGTGCGCG GCGTGCTGGT GTACCTTGAC GGGCGCACCG TGCGGCCCGT GGCCCTGCGC ACCGCCGACG CCGCCCCGCA GAACGACGCC CCACAGAACG ACGCCAATGA AGGACACCGC CCGTGA
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Protein sequence | MPTPTLTQIK ASAGSGKTYT LTRRFLSLLA GARDEDGRAC SLAVEGGHCW PDILAVTFTN KAASEMKERV IRLLKEHALA DPAQARKDGG DGAWPPARAA RWVDIILRRY GALNIRTIDS LLTMLVRLAA LELSLPPDFE PSFSPDEYFE PLYDLILDRA RRGDAQLRDD VRDACRLLLF HTDLKGFTVG AGLRVRLSQL LQLHLAEGGM SGPDPLNAGP APFDADAPRG GLPDVDTDAL AAKLVAIHAD MQDATATLSR ILAEEQLSAA ANLHKFLDKC AENSAFSPLS KSAYLEKGGL DDCLLKASKG KGSDDARAAF DAWRDACNDF AVRGRLIQRA LQVAPLAGLA RAMATHLPDF QRREGKLPQP LIPLHARDVL NGEFGVSEAF CRMGTRLAHV LIDEFQDTSR DQWAAIEPLA VECLSRGGGL TWVGDVKQAI YGWRGGDSAL FDDILASPAL TAIVPDPQRE TLPRNWRSRA AIVRHNNTVF AQLDDPLRAR GVLSAMLGDK TPDHVLDEAA ASVARAFAGA AQEVPDRDSA QGGLVRIVPV HGEDNGDLRD KVRQQLRALF MDDLAARRPW RDVAVLVRKN DESAQVASWL MDWGVPVVTE NSLRLADHPL VTQTVALLAF LDYPPNALAL WEVLTGVELF GGISGLSDHA LRDWLADRCA RPADDPRGGK GLLADFRATF PVAWETWLAP FYARAGLMGP YDTVREIFER FRVAQRHPED IGYVRRFLEV VHNAESRGLT SLATFLEFWV ESGGEEKVPM PEAMDAVRVM TMHKSKGLEF PVVVIPFHHQ PDRTDPPLVV AELDGQPLLA PLCPEMGDRY HHAQAAAAAE KLHLLYVGWT RPVDELHAYV TSTPFAERSS SLLAGVRALL TGCAIDTGQE YVAGVVPPAR ATDAHAGSDT EDTREAPRDE AAAQAAPPDA PQAVPAPLPS PARAPAPGPL PGHAAAHAPD LPSPAAPWRP MQWLPRLKIF RNQLEEFTFT ERRRGMLVHA CLEQLRLTGT PDQDAARAVA HGMRAFPLPV PDPEATANEL TAMLAWLAAL PQAAHWFTHG VPEQSIMDAQ GSIHRTDLMV DDGETCTVVE WKTGRPSDDH VAQVRRYLGL LAEATGRGPA GVRGVLVYLD GRTVRPVALR TADAAPQNDA PQNDANEGHR P
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