| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0617 |
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| Symbol | |
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| ID | 7172504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 733173 |
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| End bp | 735824 |
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| Gene Length | 2652 bp |
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| Protein Length | 883 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643539117 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002435042 |
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| Protein GI | 218885721 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.00427205 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTAACTA CCCGCCGAGA GACGTACTGG CGCCGCACGG CGTCACGCAA CCGTCACCAC
GCCTTCAAGA GCAAGCGGAC AGCGGACGGC ACACTCACCA TTCCGCGCCG GATCATGCCC
GACAACGTGT CCGACAGTAT TCGGGGGGGA TGCATGCAAC ATACCTGGCT GGAGCCGTTT
CTGGAAATTC TGGGCCGCAG GCGCGGCGAT ACGGGCCACG CAGCGCACCC GGGCGACCTT
GCGCCGGGCG CCGGGCACGC CGAAGACATG CCGCCGGTCT TCTCGACCAT CGAAGTCCCC
GAAGCCGTGC CCGGTCCCAC CCCTGGCGCC GCATCAGCTA CCCTGTCAGC TGCCACGCCC
GGCGCTCGCG CCACTTCGCG AACCGTACCC GATTCCGCGC ACCACGCGCA TGCCGCCCAC
GCCACGGACG CCTCGGTACG CGAAATGGTG GCCCGGCACG AGGCGCTGCA CATGCTGCTG
GTGCGCATGG TGGACCACGT GCTGGTGCGC GACCTGTACG GAGAGGAGAT CACCGCGGGC
ATCGAGTCCC TGCTGGTGGA CGGGTTGTGG GCGGCGCTGC CGGGCCTGAG CGGCCAGCCC
GCATCGGGGC ATCACCTGCT GCCGCTGGAG TCGGGCGAAT TTCTGGTGTT CTGGCCGGAA
CCGGCCGCCC GTCCGCAGCG TCTGGCCGAC GCCGCCTTCA CCATGAAGCT GAAGTTGCAG
CACCACCTGA AGGATTCCGT GCTGCGCTGG ACCGGGCGCG AGGTCAGCAT AGGCGTGGGC
TGCGCCACCT ATCGCCGCCG CCCGGGCGCG GAGCCGCGCC GGGAATTCTT TCAGGCCGTG
CGCGAGGCGC GCACCATGGC CCGCAAGGAA CTGGACCTGT CCGACCTGCG CCTTGCGCGC
GACTTCAAGG CCGTATTGCA GGACAACGCC ATCCGCACCC TGTACCAGCC CATCGTGCGC
TTTCCCACCG GGCGGATCAT GGCGTGGGAG GCCCTGAGCC GGGGCCCGGT GGACACCCCC
TTCCACTCGC CCATGATGCT GTTCGACATC GCGGAGGAAC TGGGCATGCT CTTCGCGCTG
GAACGCATCT GCCGCGAACG GGCCATTGCC TGCGCGGGCA CGCTGGCCCC GGACCAGAAG
CTGTTCCTGA ACATCCACCC GCGCACCCTC ACCGACCCCG GCTTTACCCC CGGCAGCACG
CTGGAGGCGG TGCGGGCCAT GGGCCTTGCG CCGGAAAACA TCGTCTTCGA GATCACCGAG
CGGCATTCCA TCCGCGATTT CGGGGTGTTC TACAAGACTC TGTCGCACTA CCGGGGGCAG
GGGTTCAAGG TGGCCATCGA CGACGCGGGC ACCGGCTATT CCGGCCTTGC CACCATCGCC
GAACTGAAGC CCGACTTCAT CAAGATCGAC ATGTCGCTCA TCCGCAACAT CAACCGCGAC
CCGGTGCGCC GCGCCCTGAT GGAAACGCTG GTCAGCTTTG CCGAAAAGAT CGGCTCGCGG
GTCATCGCGG AAGGCATCGA AACCCGGGAG GAAGCGGCCA CCCTGATGGC CATCGGCGCG
CACTACGGCC AGGGCTACTA CCTGGGCCGC CCCGACCACC CCAAGCAGGA AACCCACGTG
GACATCGGTG AACTGCGCCC CACGGCGCAA CTGCCCAGCG TGGGCAGCCT TGCCTGCTCC
ATGCCCGTGG GCGAACTGGC GGAACCGGCC CACACCGTGC CACCCACCAC CCTGGCGGGC
GAAGTCCGCA GGCTCTTCGA AACATCCGAC CCGTTGACCA GCATCGCCGT GACGGACGAG
CGCGGCAAGC CGCTGGGGCT GATCATGGAC TACCACCTCA ACCGGCAGCT TTCGGCACAG
TACGGCGTGG CCCTGTACTT CAAGCGGCCC GTGTCCGCCG TCATGGACGC GAGGCCGCTG
GTGCTGGAGC AGACCACCCC CGTGGAGGAC GCCGCCCGCC TTGCCATGTC GCGCAGCCGG
TTGCAGGCCT ACGACGACAT CATGATCACC CGCGCCGGGG TGCTGGCGGG CACCGTTTCG
GTGCAGCGGC TGCTGCACAA GCTGGCCGAG GTGCAGGTGG AACTGGCCAA GGGCACCAAC
CCCCTCACCG GTCTGCCGGG CAACGTGGCG CTGGAAAAGG AGCTGGAAAC CCGCCTGGCC
GGGGGGCAGC CCTTTTCGCT GCTGTACGCG GACCTGGACA ACTTCAAGAG CTACAACGAC
ACCTACGGCT TCAAGAACGG CGACAGGATC ATCCTGCTGC TGGCCAAGGT GCTGTCGTGG
GCGGTGCAGC GGCACGGGGC CAAGGGCGAC TACGTGGCGC ACATCGGCGG CGACGACTTC
GTGTGCATCA CCTCGCCCCG CCATGCCGAA CGGGTGTGCC GGGCGGCCAC GCGCTGCTTC
GGGCGGCTGG TGCGCGGCTG CTACTGCGCG GAAGACATTG CGCGCGGCTG GATAACCGCG
CGCGGTCGCG ACGGCATGGA GCGGCGCTTT CCGTTCGTTT CCGTCTCGCT GGCGGTGCTG
GATTGCCACG AACGCAGCAA CCTGCACGAG ATAGGAGAAC GCGCCGCCCA CGTGAAGCAC
CTGGCCAAGG CCATTCCCGG CAACGCCTAC GTGCTGGAAT GCGGGGTGTG CCAGATGCGC
GCCCTGCACT GA
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| Protein sequence | MLTTRRETYW RRTASRNRHH AFKSKRTADG TLTIPRRIMP DNVSDSIRGG CMQHTWLEPF
LEILGRRRGD TGHAAHPGDL APGAGHAEDM PPVFSTIEVP EAVPGPTPGA ASATLSAATP
GARATSRTVP DSAHHAHAAH ATDASVREMV ARHEALHMLL VRMVDHVLVR DLYGEEITAG
IESLLVDGLW AALPGLSGQP ASGHHLLPLE SGEFLVFWPE PAARPQRLAD AAFTMKLKLQ
HHLKDSVLRW TGREVSIGVG CATYRRRPGA EPRREFFQAV REARTMARKE LDLSDLRLAR
DFKAVLQDNA IRTLYQPIVR FPTGRIMAWE ALSRGPVDTP FHSPMMLFDI AEELGMLFAL
ERICRERAIA CAGTLAPDQK LFLNIHPRTL TDPGFTPGST LEAVRAMGLA PENIVFEITE
RHSIRDFGVF YKTLSHYRGQ GFKVAIDDAG TGYSGLATIA ELKPDFIKID MSLIRNINRD
PVRRALMETL VSFAEKIGSR VIAEGIETRE EAATLMAIGA HYGQGYYLGR PDHPKQETHV
DIGELRPTAQ LPSVGSLACS MPVGELAEPA HTVPPTTLAG EVRRLFETSD PLTSIAVTDE
RGKPLGLIMD YHLNRQLSAQ YGVALYFKRP VSAVMDARPL VLEQTTPVED AARLAMSRSR
LQAYDDIMIT RAGVLAGTVS VQRLLHKLAE VQVELAKGTN PLTGLPGNVA LEKELETRLA
GGQPFSLLYA DLDNFKSYND TYGFKNGDRI ILLLAKVLSW AVQRHGAKGD YVAHIGGDDF
VCITSPRHAE RVCRAATRCF GRLVRGCYCA EDIARGWITA RGRDGMERRF PFVSVSLAVL
DCHERSNLHE IGERAAHVKH LAKAIPGNAY VLECGVCQMR ALH
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