| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0476 |
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| Symbol | |
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| ID | 7172362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | - |
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| Start bp | 557642 |
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| End bp | 560098 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643538975 |
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| Product | homocysteine S-methyltransferase |
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| Protein accession | YP_002434901 |
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| Protein GI | 218885580 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase
[TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 0.0411261 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCAGATT TTCGTCAAGC GCTTCGGTCA GGTCGTCGGC TGGTCTTCGA TGGCGGCATG
GGTACCATGC TCCAGTCGCG CGGGTTGCCG CCCGGCGTAA GCCCGGAACT GTTCTGCCTG
GCCCGGCCCG ACGTGCTGGT GGGCATTCAT GCCGACTACC TGCGGGCCGG GGCCGACGTG
CTGACCACCA ACACCTTTGG CGGCTGCATC CATAAATTGG GCACGGGCCC CGGCGCTCCC
GACGTGGTGG AGTTCAACCG GGCCATGGCC CGCGCCGCGC GCGAGGCGGT GCTTGCCAGC
GGCCGCGAGG CCTTCGTGGC GGGCAGCGTG GGGCCGTCCG GCCACTTCAT GCGCCCGCTG
GGTGATCTGG ACCCCGCCGA ACTGGTGGCC GCCTTCCGCG CCCAGATCCG GGGGCTGGTG
CAGGGCGGGG TGGACCTGAT TCTGGCCGAG ACCCAGTTCG ACCTGGCGGA GGCACGGGCC
ATAGTGCTGG CCGCGCGCGC CGAGTGCGAC CTGCCCGTGG GCGTTTCCAT GACCTTCGAG
AACGGCGTCA GCCTTACCGG CACGCGGCCC GAAGTGTTCG TGCAGTCCAT GCTCAACATG
GGCGTGGACC TTGTGGGCAC CAATTGCAGC GCCGGGCCGG AGCAGATGGC AGAGGTGGCG
GATGAACTGC TGGCCATCTC CGAAGTGCCT GTGCTGGTGG AACCCAACGC AGGCCTGCCG
GAACTGGTGG ACGGCAAGAC CGTGTTCCGC CTGGGGCCGG ACGACTTCGC CCGGCACACC
GCGCGCTTTG CCGCGTCCGG CGTGCGCATG CTGGGCGGCT GCTGCGGCAC CACGCCCGAC
CACATCGCCG CCCTGCGCGG CGCACTGGAC AACCTTTCCG GTGGCCTTGT TCCCGATCCG
GCCCGGCGCG ACGGCATCGT CCTGACCACT CGCGCCCAGG CCGTGCACAT CGGGGCGGGC
AGCCCAATCC GCATCATCGG CGAACGCATC AACCCCACCG GCAAGAAGCT GCTGACGGCG
GAACTGCAGG CGGGCGAATT CGCCCAGGCA CTGCGCTTTG CCGACGAACA GGTGGAGGCG
GGCGCGCCGC TGCTGGACGT GAACGTGGGC GCGCCCATGG TGGACGAGGC GGTGCTGCTG
CCCGCGCTGG TGGAACGCCT GGTGGCCCGC CATTCGCTGC CGCTGTCGCT GGATTCGTCC
AATGCCGACG CCATTGCCGC GGCCCTGCCG TTTCATCCCG GCTCGCCGCT GGTCAACTCC
ATAAGCGGCG AACCGGGCCG CATGGAGCAC CTGGGGCCGC TGTGCCGCGA CCACGGCGCG
CCGTTCATCC TGCTGCCGCT CAAGGGGCGC AAGCTGCCGG TGACGGCGGC GGAACGCATT
GCCATCATAG AGGAACTGCT GCAACAGGCC GACAGCCTGC GCATTCCGCG CCGTCTGGTC
ATGGTGGACG TACTGGCCCT GGCCGTGTCG TCCAAGGCAG AGGCCGCGCG CCACTGTCTG
GATACCATCC GCTGGTGCGC GGCGCAGGGG CTGCCCACCA CCATCGGGCT GTCCAACATC
TCGTTCGGCC TGCCCGCGCG CGAACTGCTG AACTCCACAT TTCTGGCCAT GGCGGCGGGC
GCGGGGCTTT CCTCGTGCAT CGCCCATCCC GGCAACGCGC GCATCCGCGA GGCGGTGGCC
GCCTCCAGCG TGCTGCTGGG GCTGGACGCC AACGCCGAGT CGTTCATCGA AGGCTATTCC
GGCTGGACGC CGGGCGGTGA CGCCACCGGC GCCACGCCCG CTGGCGTGGC TGGCGGCACG
GGCGGGGGCA CGGGCGGCGT GAAGGCCAAG GCCGCCACCC TGGAAGAGGC CGTCATCCGG
GGTGACCGCG AGGGCGCGCT GGCCCTGGTG GAACGCGCCC TGTCCGAAGG GGCCGACCCG
TTCTCGCTGG TGCAGGAAAA GCTGATCCCC GGCATCACCG AGGTGGGCCG CCGCTACGAG
CGGCGCGAAT ACTTTCTGCC GCAGCTCATC CGCTCGGCAG AGACCATGCA GCATGCCTTC
CGCAAACTTC AACCGTTGCT TGAAGCTCAG CGGGGGCATG AAGCCCGCCC GGTGATCATC
ATGGCCACGG TGGAGGGCGA CATCCACGAC ATCGGCAAGA ATATCGTCAC CCTGATGCTG
GGCAACCACG GCTTCGACGT GGTGGACCTG GGCAAGGACG TGAAGGCCGC CGACATCGTG
GAGGCCGCGG AACGCCACGG CGCGCGGGTG ATCGGTCTTT CGGCCCTGAT GACCACCACC
ATGGTGCGCA TGGAAGACAC CGTGCGCCTG GTGCGCGAGC GCGGCCTGCC CGTCAAGGTC
ATGGTGGGCG GGGCGGTGGT TACGCCCGCC TACGCCGAGG CCATCGGCGC GGACGGCTAT
TCCGCCGACG CCGTGGAGGC CGTGCGGGTG GCCAAGGAAC TGCTGACGGT GCAGTAG
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| Protein sequence | MPDFRQALRS GRRLVFDGGM GTMLQSRGLP PGVSPELFCL ARPDVLVGIH ADYLRAGADV
LTTNTFGGCI HKLGTGPGAP DVVEFNRAMA RAAREAVLAS GREAFVAGSV GPSGHFMRPL
GDLDPAELVA AFRAQIRGLV QGGVDLILAE TQFDLAEARA IVLAARAECD LPVGVSMTFE
NGVSLTGTRP EVFVQSMLNM GVDLVGTNCS AGPEQMAEVA DELLAISEVP VLVEPNAGLP
ELVDGKTVFR LGPDDFARHT ARFAASGVRM LGGCCGTTPD HIAALRGALD NLSGGLVPDP
ARRDGIVLTT RAQAVHIGAG SPIRIIGERI NPTGKKLLTA ELQAGEFAQA LRFADEQVEA
GAPLLDVNVG APMVDEAVLL PALVERLVAR HSLPLSLDSS NADAIAAALP FHPGSPLVNS
ISGEPGRMEH LGPLCRDHGA PFILLPLKGR KLPVTAAERI AIIEELLQQA DSLRIPRRLV
MVDVLALAVS SKAEAARHCL DTIRWCAAQG LPTTIGLSNI SFGLPARELL NSTFLAMAAG
AGLSSCIAHP GNARIREAVA ASSVLLGLDA NAESFIEGYS GWTPGGDATG ATPAGVAGGT
GGGTGGVKAK AATLEEAVIR GDREGALALV ERALSEGADP FSLVQEKLIP GITEVGRRYE
RREYFLPQLI RSAETMQHAF RKLQPLLEAQ RGHEARPVII MATVEGDIHD IGKNIVTLML
GNHGFDVVDL GKDVKAADIV EAAERHGARV IGLSALMTTT MVRMEDTVRL VRERGLPVKV
MVGGAVVTPA YAEAIGADGY SADAVEAVRV AKELLTVQ
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