Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0353 |
Symbol | |
ID | 7172237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | - |
Start bp | 410826 |
End bp | 412076 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 643538851 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_002434778 |
Protein GI | 218885457 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 0.00862567 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCACCACT TCCAGTACCG CGAAGGCCAA CTGTACGCCG AAGGCGTGCC GGTGCACGAA CTGGCCAGCC GCTACGGCAC GCCGTTGTAC GTCTATTCGG CGGCCACCCT GCGCCGCCAT TTCCAGGCCT TCGACAGCGC GTTCACAGGG GTCGGTCACC TGACCTGCTA TTCGGTCAAG GCCAACTCCA ACGTGCATCT GCTACGCCTG CTGGCGGACA TGGGCGCGGG AATGGACATC GTGTCCGGGG GCGAACTGCA CCGCGCGCTT GCCGCCGGGG TGCCCGGCCA GCGCATCGTG TACAGCGGCG TGGGCAAGCA GGACGACGAA ATCCGCGCCG CCCTCGAGGC GGACATCCTG CTGTTCAACG TCGAATCGGT GCAGGAACTG GAGCGCATCA ACGCCGTGGC CGGGCAGATG GGCCGCACCG CGCGCATCGG CGTGCGCATC AACCCCGACG TGGACCCGAA GACCCACCCG TACATATCCA CGGGCATGCG CAACAACAAG TTCGGGCTGG ACATGGAACA GGCCCTGGCG GCCTACCTGC TGGCCCGCGA CCTGCCCAAC GTCCAGCCCG TGGGCATCGA CTGCCACATC GGTTCGCAGC TCACCACGCT GGCGCCGTTC CTGGAGGCGC TGGACCGGGT GCTGGACTTC CACGAACGAC TGCGCGACCT CGGGCTTGCC ATCACTCATC TGGACCTTGG CGGCGGGCTC GGCATCACCT ACGGCGAAGA AACCCCGCCC CACCCCAGGG AGTTCGGCGA GGCGGTGTCC GAACGACTGC GCGGGCGCGG GCTGTCGCTG ATCCTGGAAC CGGGCCGGGT CATCGCGGGC AACGCGGGCA TTCTGGTGGG CCGGGTGATC TACACCAAGT CCACTCCCAG CAAGAACTTC ATCATCGCGG ACGCGGCCAT GAACGACCTT GTCCGCCCTT CGCTGTACCA GTCATACCAT CGCATCGCAG AGGTGCAGCC CGCCGGGCGC GACGAGATCA CCGCCGATGT GGTGGGCCCC ATCTGCGAAT CGGGCGACTT TCTGGCGCGC GACCGCATCC TGCCGGACAT GCAGCAGGGC GAACTTCTGG CTGTCTTCTC GGCCGGGGCG TACGGCTTCT CCATGAGCTC CAACTACAAC TCGCGCCCCC GCGCGGCAGA GGTGCTGGTG GACGGCGCAA CGGCGCGGTG CATCCGCAAG CGCGAAACCC TGGCGGACCT GGTGGCACCA GAGCTGAACG CAGAGGGGTG A
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Protein sequence | MHHFQYREGQ LYAEGVPVHE LASRYGTPLY VYSAATLRRH FQAFDSAFTG VGHLTCYSVK ANSNVHLLRL LADMGAGMDI VSGGELHRAL AAGVPGQRIV YSGVGKQDDE IRAALEADIL LFNVESVQEL ERINAVAGQM GRTARIGVRI NPDVDPKTHP YISTGMRNNK FGLDMEQALA AYLLARDLPN VQPVGIDCHI GSQLTTLAPF LEALDRVLDF HERLRDLGLA ITHLDLGGGL GITYGEETPP HPREFGEAVS ERLRGRGLSL ILEPGRVIAG NAGILVGRVI YTKSTPSKNF IIADAAMNDL VRPSLYQSYH RIAEVQPAGR DEITADVVGP ICESGDFLAR DRILPDMQQG ELLAVFSAGA YGFSMSSNYN SRPRAAEVLV DGATARCIRK RETLADLVAP ELNAEG
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