Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0130 |
Symbol | |
ID | 7172005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | - |
Start bp | 143616 |
End bp | 147137 |
Gene Length | 3522 bp |
Protein Length | 1173 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 643538624 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_002434559 |
Protein GI | 218885238 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 0.103911 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGATT TCGTTCATCT GCATTGCCAC ACCGAATACA GCCTGCTCGA CGGGGCCATC CGCCTGAAGG ACCTGTGCGC CAAGGCGGTG GACTTCGGCA TGCCCGCCGC CGCCATCACC GACCACGGCA ACCTTTACGG CGCAGTCTAT TTCTACAATA CCTGCAAGCA GTTCGGCATA AAGCCCATCA TCGGCTGCGA AGTCTACGTG GCCAACGACC ACACGGACAA GACCTCGGAG CTGGCCCGCG TGCGCCACCA TCTGGTGCTT CTGGCGCGTG ACAACGAAGG CTACCACAAC CTAGTCAAGC TGGTATCCCA CGGCTTTCTG CACGGCTTTC ACTACAAGCC GCGCGTGGAC ATGGACCTGC TGCGCCAGTA CTCGGGCGGC ATCACCGCCC TTTCCGCCTG CCTGGCCGGA CAGGTGCCGC GCGCGCTCCT GCGCAGCGGC ATGGACGACG CCATCCGCAT CGCCCGCGAA TACGAAGCCA TCTACCCCGG CAACTTCTAT CTCGAATTGC AGTCCAACGG CCTGAAGGAA CAGGACGAGC TGAACGAGAA GCTCATCGAG CTCGCCGACC ACACCGGGCT GCCCCTGGTG GCCACCAACG ACTGCCACTA CCTGGAAGCC AGCGACGTGG AAGCCCACGA CGTGCTGCTG TGCATCCAGA CCCAGGCCAA GGTGGACGAC GAGCGCCGCA TGCGCTTCGA GACCAAGGAG CTGTACTACA AGTCGCCGGA GGAAATGGCC AAGGCGTTCG CCCACGTGCC CGACGCCGTG GCCAACACCG GGCGCATCGC CGAGCAGTGC GCGGTGAAGT TCGAATTCGG CAAGTACGTC TTTCCCGTGT ATGCCCTGCC AGAGGGCATG ACCCTGGAGG ACGAGTTCCG CCGCCTCTCG CGCGAAGGGC TGAAGCGCCG CCTGGAACGC CACCCCAACC GCGACACCAT CGACCACGAC CTGTACTGGA AGCGCCTTGA GCTGGAACTG GACGTCATCG GCCAGATGGG CTTTCCCGGC TACTTCCTCA TCGTGCAGGA CTTCATCAAC TGGGCCAAGG ACAACGGCAT TCCCGTAGGC CCGGGGCGTG GTTCCGCCGC CGGTTCGCTG GTGGCGTGGT CGCTGCGCAT CACCAACCTC GATCCCATCC CGTACAACCT GCTGTTCGAA CGCTTCCTGA ACATCGAACG CGTGTCCATG CCCGATATCG ACGTGGACTT CTGCGAACGC CGCCGTACCG AGGTCATCCG GTACGTGGGC GAGAAGTACG GCGAAGACAT GGTGGCGCAG ATCACCACCT TCGGGAAGAT GAAGGCGAAA GCGGTGGTGC GCGACGTGGG CCGCGCCCTG GGCATGACCT TTGCCGAGAC CGACCGCATC GCCAAGCTGG TGCCCGAAGA CCTGAAGATG ACGGTCAAGA AGGCCATCGA CGCGGAGCCG GACCTGGCCG CGCTGTACAA GACCGATCCG CAGATCCGCA AGCTGCTGGA CGTTTCCATG CGGCTTGAAG GGCTTTCGCG CCATGCCTCC ACCCACGCGG CGGGCGTCGT GGTTTCCGAC AGGCCCATGC GCGAGTACCT GCCGCTGTAC CGGGGAAAGA AGGGTGAAAT AGTCACCCAG TTCGACATGA AGATGGTCGA GAAGGTCGGG CTGGTGAAGT TCGACTTTCT GGGCCTGCGC ACCATGACCC TGGTGCAGGA TTCGCTGGAC GAGATCGCCC GGCAGGGCAA GACCCCGCCC GACCTCGACA CCCTGGCCCT GGACGACGCG GAAACCTACG AACTGTACTC GCGCGGGGAC ACCGACGGCA TCTTCCAGGT GGAAAGTTCG GGCATGCGCC AGTACCTGCG CATGCTCAAG CCGTCCTGCT TCGACGACGT CATCGCCATG CTGGCCCTGT ACCGGCCCGG CCCGCTGGGT TCGGGCATGG TGGACGAATT CATCAAGCGC AAGCACGGCG AGGTGCCCGT CACCTACCCC CTGCCCTCGC TGGAAGACTG CCTGCGCGAT ACCTACGGCG TCATCGTGTA CCAGGAACAG GTGATGCAGA TCGCCCAGAT CGCGGCGGGC TACACCCTGG GCGGCGCGGA CCTTCTGCGC CGCGCCATGG GCAAGAAGAA CGCCGAGGAA ATGGGCCAGC AGCGCATCAA GTTCGTGGAG GGCGCGCAGA AGAACGGAGT TCCCAAGGCC ACGGCCGACG AAATCTTCGA CCTGATGGAA AAGTTCGCGG AGTACGGCTT CAACAAGTCG CACAGCGCGG CCTATGCGCT CATCTCGTAC TACACCGCGT ACCTGAAGGT ACACTTTCCC ACGGAATTCA TGGCCGCCCT GCTCACGTCG GAAATGGGCA ACCAGGACAA GCTGCTGAAG TACGTGGCCG CGTGCAAGGA CATGGGCATC GCCGTGTTGC AGCCCAACGT GCAGGCCAGC CGCCGCGAAT TCACCGTGCA CGAGGGGGCC ATCGTCTTCG GCCTTGGCGG CATCAAGAAC GTGGGCGACG AAGCCATCCG CGAAATCGTG GATGCCCGCG AGGAAGGCGG GGTGTTCGCC TCGCTGCTGG ACCTGTGCAT GCGCGTGAAC CTGCGCAAGG TGACCAAGCG CGTGCTGGAA AGCCTGATCA AGGGCGGCGC GTGCGATTGC CTGGGCTGCA CCCGCGCGGG CATGCTGGCC GCGCTGGACA ACGTGGTCAG CAAGGCCCAG AAGCGCCTGA AGGACAAGGA ATCCAACCAA GTTTCGCTGT TCACCATGGT GCCGGAAGAA CCCGCCGTGT GCCCCGGCAT CGGCTTCGAC TGCGAAGAGC AGCAGGCCCA GGAGTGGGAC GACGACCAGA AGCTGCGCTT CGAAAAGGAG GCGCTGGGCT TCTTCCTGAC CAGCCATCCG CTCCAGCCCT ACCGCAAGGA ATTGTTCCGC CTGCGCCTTA CCCCGCTGGA AGAAACGCGG GACATGGCCC CCGGCATGTC GCTGAAGACC GCCGTGCTGG TCACCGGCAT CAAGGAGCAC ATGACCAAGA AGGGCGCGCG CATGGCCTTC CTGCAGGTGG AAGACCTTAC CGCGTCCGGC GAATGCGTGT TCTTTCCCGA ACCGTACGCG GAGTTCCGCG AACTGCTGAA GTCCGACCAG CCGCTCTTGC TGGAGGCCAC CATCAGCAAG CAGCAGAACG ACGACGGCGG CAGGAACGGC GGGGGCGGTG ACGGCATGTC CGGTTCGGCA GGCATGACCG AAGACGACGA CGACACCCCG CGCGAAATCA AGCTGCTGGG CGACAAGGTC ATTCCGCTGG CCCGCGCCTG CGGCGCCAGC GACCAGCCCG TGACCATCGA CATGCCCCTG CCCCGCGTGG AGCCCGCCAG CCTTGCCGCC CTGCGCGCCA TTCTGGAGCG GCATCGCGGC CCGGTGCCGG TGAACGTGCG CCTGGTGGTG GACGAGTCCG AATGCCTGTT GCAGTTCGGC CCGCAGTGGA TGGTCCAGCC CGGCCCGGCG TTCGAGACGG ATATCGCCCA CTGGACCGAA GGCCCGGAGT AG
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Protein sequence | MSDFVHLHCH TEYSLLDGAI RLKDLCAKAV DFGMPAAAIT DHGNLYGAVY FYNTCKQFGI KPIIGCEVYV ANDHTDKTSE LARVRHHLVL LARDNEGYHN LVKLVSHGFL HGFHYKPRVD MDLLRQYSGG ITALSACLAG QVPRALLRSG MDDAIRIARE YEAIYPGNFY LELQSNGLKE QDELNEKLIE LADHTGLPLV ATNDCHYLEA SDVEAHDVLL CIQTQAKVDD ERRMRFETKE LYYKSPEEMA KAFAHVPDAV ANTGRIAEQC AVKFEFGKYV FPVYALPEGM TLEDEFRRLS REGLKRRLER HPNRDTIDHD LYWKRLELEL DVIGQMGFPG YFLIVQDFIN WAKDNGIPVG PGRGSAAGSL VAWSLRITNL DPIPYNLLFE RFLNIERVSM PDIDVDFCER RRTEVIRYVG EKYGEDMVAQ ITTFGKMKAK AVVRDVGRAL GMTFAETDRI AKLVPEDLKM TVKKAIDAEP DLAALYKTDP QIRKLLDVSM RLEGLSRHAS THAAGVVVSD RPMREYLPLY RGKKGEIVTQ FDMKMVEKVG LVKFDFLGLR TMTLVQDSLD EIARQGKTPP DLDTLALDDA ETYELYSRGD TDGIFQVESS GMRQYLRMLK PSCFDDVIAM LALYRPGPLG SGMVDEFIKR KHGEVPVTYP LPSLEDCLRD TYGVIVYQEQ VMQIAQIAAG YTLGGADLLR RAMGKKNAEE MGQQRIKFVE GAQKNGVPKA TADEIFDLME KFAEYGFNKS HSAAYALISY YTAYLKVHFP TEFMAALLTS EMGNQDKLLK YVAACKDMGI AVLQPNVQAS RREFTVHEGA IVFGLGGIKN VGDEAIREIV DAREEGGVFA SLLDLCMRVN LRKVTKRVLE SLIKGGACDC LGCTRAGMLA ALDNVVSKAQ KRLKDKESNQ VSLFTMVPEE PAVCPGIGFD CEEQQAQEWD DDQKLRFEKE ALGFFLTSHP LQPYRKELFR LRLTPLEETR DMAPGMSLKT AVLVTGIKEH MTKKGARMAF LQVEDLTASG ECVFFPEPYA EFRELLKSDQ PLLLEATISK QQNDDGGRNG GGGDGMSGSA GMTEDDDDTP REIKLLGDKV IPLARACGAS DQPVTIDMPL PRVEPASLAA LRAILERHRG PVPVNVRLVV DESECLLQFG PQWMVQPGPA FETDIAHWTE GPE
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