| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3246 |
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| Symbol | rpoB |
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| ID | 7383795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 3463762 |
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| End bp | 3467886 |
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| Gene Length | 4125 bp |
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| Protein Length | 1374 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643656559 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002554675 |
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| Protein GI | 222112411 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCAAA CATCCACGTA CAGTTATACC GAACGCAAGC GCATTCGCAA GAGCTTCGGT
AGCCGCGACA GTGTGCTCAA GGTCCCGTAC CTGCTGCAGA TGCAGCGGGA TGCCTATACC
GCGTTCCTGC AGGCCGACAC GGCCCCGCAA AAACGCAGCA TCGAAGGCCT GCAGGCCGCA
TTCAACTCCG CGTTCCCCAT CGTTTCCCAC AACGGCTTCG TGGAGATGAA GTTCGTTGAA
TACAACCTGG CCAAGCCGGC GTTCGACGTG CGCGAATGCC AGACCCGCGG CCTGACTTTT
GCATCGGCCG TGCGTGCCAA GGTGCAGTTG ATCATCTACG ACCGCGAGTC CTCGACCTCG
CAGTCCAAGG TGGTCAAGGA AGTGAAGGAG CAGGAGGTCT ACATGGGCGA AGTGCCCCTG
ATGACCGATA AGGGCTCCTT CATCATCAAC GGCACCGAGC GCGTGATCGT CTCCCAGCTG
CACCGCTCGC CCGGCGTGTT CTTCGAGCAC GACAAGGGCA AGACCCACAG CTCGGGCAAG
TTGCTGTTCT CTGCGCGCAT CATCCCCTAC CGCGGCTCCT GGCTGGACTT CGAATTCGAT
CCGAAGGACA TCCTGTACTT CCGCGTGGAC CGTCGCCGCA AGATGCCGGT CACGATCCTG
CTCAAGGCCA TCGGCCTGAA CCCCGAGTCC ATCCTGGCGA ACTTCTTCGT CAATGACAAT
TTCCGCCTGA TGGACAGCGG TGCTCAGCTG GAGTTCGTGC CCGAGCGCCT GCGTGGCGAG
GTGGCGCGCT TCGACATCAC CGACAAGGCC GGCAAGGTGA TTGTGGCCAA GGACAAGCGC
GTGACGGCGC GCCACACGCG TGAGCTGGAG CAGTCCGGCA CCACGCACAT CAGCGTGCCT
GAGGACTTCC TCATCGGCCG CGTGGTGGCC CGCAACATCG TAGACGGCGA CACCGGCGAG
ATCCTGGCCA AGGCCAACGA AGAGCTGACC GAGGCGTTGC TCAAGAAGCT GCGCGCTGCT
GGCGTGCAGG ACCTCCAGGT CATCTACACC AACGAACTCG ACCAAGGCGC CTACATTTCG
CAGACGCTGC GCATCGACGA AACCGTGGAT GAATTCGCCG CGCGCGTGGC CATCTACCGC
ATGATGCGCC CCGGCGAGCC GCCGACCGAG GATGCCGTGC AGGCCCTGTT CCAGCGCCTG
TTCTACAACC CCGACACGTA CGACCTGTCG CGCGTGGGCC GCATGAAGTT CAACGCCAAG
ATCGGCCGCG ACGAAGCCAC CGGCCCGATG GTGCTGTCCA ACGACGACAT CCTGGCCGTG
GTCAAGATCC TGGTGGACCT GCGCAACGGC AAGGGCGAGG TGGACGACAT TGACCACCTG
GGCAACCGCC GCGTGCGCTG CGTGGGCGAG CTGGCCGAAA ACCAGTACCG CACGGGCCTG
GCACGTATCG AAAAGGCCGT GAAGGAGCGC CTGGGGCAGG CCGAGCAAGA GCCGCTGATG
CCCCACGACC TGATCAACTC CAAGCCCATT TCCGCGGCGC TCAAGGAGTT CTTCGGTGCG
TCCCAGCTGT CGCAGTTCAT GGACCAGACC AACCCGCTGG CCGAGATCAC GCACAAGCGC
CGTGTTTCGG CCCTGGGCCC GGGCGGTTTG ACCCGCGAGC GTGCCGGCTT CGAGGTGCGT
GACGTGCACG TGACCCACTA CGGCCGCGTG TGCCCGATCG AGACGCCTGA AGGTCCGAAC
ATCGGTCTGA TCAACTCGCT GGCCCTGTAC GCGCGCCTGA ACGAGTACGG CTTCATCGAG
ACCCCCTACC GCCGCGTGGT GGACGGCAAG GTCACGATGG AAATCGACTA CCTGTCGGCC
ATCGAAGAAG GCAAGTACAT CATCGCCCAG GCCAACGCCA CGCTGGATGC CGAAGGGCGT
CTGACGGGCG ACCTGGTGTC GGCGCGCGAG AAGGGTGAAT CGACCCTGGT GTCCGCCGAC
CGTGTGCAGT ACATGGACGT GTCGCCTGCG CAGATCGTGT CGGTGGCGGC TTCGCTCGTT
CCGTTCCTGG AGCACGACGA CGCGAACCGC GCGCTGATGG GCGCCAACAT GTCGCGCCAG
GCCGTGCCCG TGCTGCGTCC CGAGAAGCCC ATGGTGGGCA CGGGTATCGA GCGCGTGGCG
GCCGTGGACT CCGGCACCGT GGTGACGGCC AACCGCGGCG GCGTGGTGGA CTATGTGGAC
GCCACCCGTA TCGTGGTGCG TGTGAACGAC GACGAAGCCG TGGCCGGTGA AGTCGGCGTG
GACATCTACA ACCTCATCAA GTACCAGCGC TCTAACCAGA ACACCAACAT CCACCAGCGC
CCCATCGTCA AGAAGGGCGA CAAGCTGGCC AAGGGTGACG TGATTGCCGA CGGCGCTTCG
ACCGACCTGG GCGAGATCGC CATCGGCCAG AACATGCTGA TCGCGTTCAT GCCCTGGAAC
GGCTACAACT TCGAGGACTC GATCCTGATC AGCGAGCGCG TGGTGGCCGA AGACCGCTAC
ACCTCGATCC ACATCGAGGA GTTGGTGGTG ATGGCCCGCG ACACGAAGCT GGGCGCGGAA
GAAATCACCC GCGACATCCC AAACCTGTCC GAGCAGCAGC TGAACCGTCT GGACGAGTCC
GGCATCATCT ACGTGGGCGC CGAAGTGCAG CCTGGCGACA CGCTGGTCGG CAAGGTCACG
CCCAAGGGCG AAACCACCCT CACGCCGGAA GAGAAACTGC TGCGCGCCAT CTTCGGCGAG
AAGGCGTCCG ATGTGAAGGA CACCTCGCTG CGCGTGGACC AGGGCTCGCA GGGCACGGTG
ATCGACGTGC AGGTGTTCAC CCGTGAAGGC ATCCAGCGCG ACAAGCGCGC CCAGCAGATC
ATCGACGATG AACTCAAGCG CTTCCGCCTG GACCTGAACG ACCAGTTGCG CATCGTGGAG
GCCGACGCGT TCGACCGTAT CGAGAAGCTG CTGACCGGCC GCGTGGCCAA CGGCGGCCCG
CAAAAACTCG CCAAGGGTAC GAAGATCGAC AAGGCCTACC TGGCCTCGGT GGAGAAGTTC
CACTGGTTCG ACATCCGCCC CGCCGAGGAA GAGGTCGCCA CGCAGCTGGA GTCCATCAAG
AACGCGCTGG AGCAGACCCG CCACAGCTTC GACCTGGCCT TTGAAGAAAA GCGCAAGAAG
CTCACCCAAG GCGACGAACT GCCCGCGGGC GTGCTGAAGA TGGTCAAGGT GTACCTGGCC
GTCAAGCGCC GCCTGCAGCC AGGCGACAAG ATGGCCGGCC GCCACGGCAA CAAGGGCGTG
GTGTCCAAGA TCGTTCCGGT CGAGGACATG CCCTACATGG CCGACGGCAC GCCTGCCGAC
ATCGTGCTGA ACCCGCTGGG CGTGCCTTCG CGCATGAACA TCGGCCAGGT TCTGGAAGTT
CACCTGGGCT GGGCCGGCAA GGGCATGGGC CAGCGCATCG GCGACATGCT GCAGCGCGAG
GCCAAGACGG CTGAGCTGCG CAAGTTCCTG GAAGAGATCT ACAACTCGCG CGGCCGCAAG
GAAGAACTGT CGCAGCTGAG CGACGACGAA ATCCTGGCCA TGGCGCGCGA GCTGACCTCG
GGCGTTCCCT TCGCATCGCC CGTGTTCGAC GGCGCGTCCG AAGAGGAAAT CAAGGACATG
CTCAAGTTGG CCTACCCGGA CGACCTCGCC CAAGCCAAGG GGCTGACCGA GACGCGCACG
CAGGCGTACC TGTACGACGG CCGCACGGGC GAGCGTTTCG AGCGCCCGAC GACCGTGGGC
TACATGCACT ACCTGAAGCT GCACCACCTG GTGGACGACA AGATGCACGC CCGCTCGACC
GGTCCGTACT CGCTCGTCAC GCAGCAGCCG CTGGGCGGCA AGGCGCAGTT CGGTGGCCAG
CGCTTCGGTG AGATGGAAGT GTGGGCGCTG GAAGCCTACG GCGCCGCCTA CGTGCTGCAG
GAAATGCTGA CGGTGAAGTC CGACGACGTG CAGGGCCGTA CCAAGGTGTA CGAGAACATC
GTCAAGGGCG AACACGCGAT CGAAGCCGGC ATGCCGGAGT CGTTCAACGT GCTGGTTAAG
GAAATCCGTT CGCTGGGCCT GGATATCGAG TTGGAACGTT CCTGA
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| Protein sequence | MAQTSTYSYT ERKRIRKSFG SRDSVLKVPY LLQMQRDAYT AFLQADTAPQ KRSIEGLQAA
FNSAFPIVSH NGFVEMKFVE YNLAKPAFDV RECQTRGLTF ASAVRAKVQL IIYDRESSTS
QSKVVKEVKE QEVYMGEVPL MTDKGSFIIN GTERVIVSQL HRSPGVFFEH DKGKTHSSGK
LLFSARIIPY RGSWLDFEFD PKDILYFRVD RRRKMPVTIL LKAIGLNPES ILANFFVNDN
FRLMDSGAQL EFVPERLRGE VARFDITDKA GKVIVAKDKR VTARHTRELE QSGTTHISVP
EDFLIGRVVA RNIVDGDTGE ILAKANEELT EALLKKLRAA GVQDLQVIYT NELDQGAYIS
QTLRIDETVD EFAARVAIYR MMRPGEPPTE DAVQALFQRL FYNPDTYDLS RVGRMKFNAK
IGRDEATGPM VLSNDDILAV VKILVDLRNG KGEVDDIDHL GNRRVRCVGE LAENQYRTGL
ARIEKAVKER LGQAEQEPLM PHDLINSKPI SAALKEFFGA SQLSQFMDQT NPLAEITHKR
RVSALGPGGL TRERAGFEVR DVHVTHYGRV CPIETPEGPN IGLINSLALY ARLNEYGFIE
TPYRRVVDGK VTMEIDYLSA IEEGKYIIAQ ANATLDAEGR LTGDLVSARE KGESTLVSAD
RVQYMDVSPA QIVSVAASLV PFLEHDDANR ALMGANMSRQ AVPVLRPEKP MVGTGIERVA
AVDSGTVVTA NRGGVVDYVD ATRIVVRVND DEAVAGEVGV DIYNLIKYQR SNQNTNIHQR
PIVKKGDKLA KGDVIADGAS TDLGEIAIGQ NMLIAFMPWN GYNFEDSILI SERVVAEDRY
TSIHIEELVV MARDTKLGAE EITRDIPNLS EQQLNRLDES GIIYVGAEVQ PGDTLVGKVT
PKGETTLTPE EKLLRAIFGE KASDVKDTSL RVDQGSQGTV IDVQVFTREG IQRDKRAQQI
IDDELKRFRL DLNDQLRIVE ADAFDRIEKL LTGRVANGGP QKLAKGTKID KAYLASVEKF
HWFDIRPAEE EVATQLESIK NALEQTRHSF DLAFEEKRKK LTQGDELPAG VLKMVKVYLA
VKRRLQPGDK MAGRHGNKGV VSKIVPVEDM PYMADGTPAD IVLNPLGVPS RMNIGQVLEV
HLGWAGKGMG QRIGDMLQRE AKTAELRKFL EEIYNSRGRK EELSQLSDDE ILAMARELTS
GVPFASPVFD GASEEEIKDM LKLAYPDDLA QAKGLTETRT QAYLYDGRTG ERFERPTTVG
YMHYLKLHHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYVLQ
EMLTVKSDDV QGRTKVYENI VKGEHAIEAG MPESFNVLVK EIRSLGLDIE LERS
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