| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3020 |
|---|
| Symbol | |
|---|
| ID | 7385466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 3218157 |
|---|
| End bp | 3220274 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643656330 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_002554453 |
|---|
| Protein GI | 222112189 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.567865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCTG CCGCCCAGGC CCCTGAAGTC CAGACCCGCC GCGAAGGCGC GGTGCTGGTG
GTCAGCATCA ACAACCCGCC CGTCAATGCC TTGGGGCAGG CGGTGCGCGC CGGCCTGCTG
GCCGCGGTGG AGCAGGCCGA GGGCGATGCC GCCGTGCGCG CCCTGCTGAT CGTGGGCGAG
GGCAAGGCCT TCATCGCCGG TGCCGACATC CGCGAGTTCG GCAAGCCCCC GGTGCCGCCG
TCGCTGCCCG AGGTGTGCAA CCGCTTGGAG TCCTGCGGCA AGCTGGTGGT CGCCGCCATC
CACGGCGCCG CGCTGGGCGG CGGGCTGGAA GTGGCGCTGT CTGCGCACTA CCGCCTGGCC
TTGCCCGCGG CCAGCCTGGG CCTGCCCGAG GTGAACCTGG GCCTGCTGCC CGGCGCCGGC
GGCACCCAGC GCGCGCCGCG CCTGATGGGC GTGAAGGCGG CAGCCGAACT GATGCTCAGC
GGCAAGCATT TGAGCGCCAA GGCCGCCGCG GCGGCGGGCC TGGTGGACCG ACTGGTCGAA
GGCACCGACC CCGTGGCCGC CGGCCTGGCC TACGCCAACG AGCTGCTGGC CCAGGGCGCG
CAGCCGCGCC GCACGCGGGA CCTGAAGATT GCCGACCAGG CCGCCGCGCG GGCCGAGCTG
GACGCGCTGG CGCTTGAGAC CGCCAAGAAG ACACGCGGCC TGTTCTCGCC CGGCAAGATC
GTGGAATGCG TGCGAGCCGC TGTGGAGCTG CCGTTCGACG AGGGCATCGC CAAGGAGCGC
GCGCTGTTCG TCGAATGCCT GAACAGCCCG CAGCGCCAGG GCCTGGTGCA CGCGTTCTTC
GCCGAGCGCG AGACCGCCAA GATCCCCGAG GCGCAGGCCG CCGCGCCGCG CCACTTCGCC
AAGATCGCCA TCATCGGCGG CGGCACCATG GGCGCGGGCA TCACCGTGTC CGCGCTGGAC
GCCGGCCTCA CCGTGACCAT GATCGAGCGC GACGCCGAAT CCATCGCGCG CGGCCAGAAG
AACGTCGAGA AGGTCTACGA CGGCCTGATC GCCAAGGGCC GCATGACCGC GGAAGGCAAG
GCCGCCATCC TGGCGCGCTA CACGCCCAGC ACCCGCTACG ACGACATCGC CGATGTGGAC
CTGGTGATCG AGGCCGTGTT CGAGGACCTG GAGGTCAAGA AGGCCGTGTT CAAGGAGCTG
GACCGCGTCT GCAAGCCGGG CGCGGTGCTG GCCACCAACA CCTCGTACCT GGACATCGAC
GCGATTGCCG CCGCCACCTC GCGCCCGCAG GATGTGATCG GCCTGCATTT CTTCAGCCCG
GCGAACATCA TGAAGCTGCT GGAGATCGTG GTGCCCGCCA AGGTGGCGCC CGACGTGGTG
ACCACCGCCT TCGCGCTGGC CAAGAAGATG AAGAAGGTGC CCGTGCGCGC CGGCGTGTGC
GACGGCTTCA TCGGCAACCG CATCCTGGCC GTGTACAAGC AGGCGGCTGA CTACCTGATG
GAAGACGGCG CCAGCCCCTA CGAGATCGAC GAGGCCGTGC GCGGCTTCGG CTTTGCGATG
GGTCCGTTCC AGGTGACCGA CCTGGCCGGT GGCGACATCG GCTGGGCCAC GCGCAAGCGG
CGCGCCGCCA CGCGCGACCC CCAGGCCCGC TACGTCGAGG TGGCCGACCG CGTCTGCGAG
CGCGGCTGGT TTGGCCAGAA GACCGGCCGG GGCTTTTACC TCTACCCGCA GGGCGCCCGC
GTGGGCCAGC CCGACCCCGA GGTGCTGGCC ATCGTGGACG CCGAGCGCGC CAAGAAGGGC
ATCACGCCGC GCCAATTCAC GGCCGACGAG ATCATGCGCC GCTACATGGC CGCCATGGTC
AACGAAGGCG CCAAGGTGGT GCAAGAGGGC ATTGCCCTGC GCCCGCTGGA TGTGGACGTG
ACCTTCCTGT CCGGCTACGG TTTTCCGCGC TGGCGCGGCG GCCCGATGAA GTGGGCCGAC
ATGACGGGCC TGGACAAGGT GCTGGCCGAC ATCCGCGCCT TCGCCAAGGA AGACCCGCTG
TTCTGGAAGC CCGCGCCGCT GCTGGAACAG CTGGTGGCCG AGGGCCGCAA CTTCGACAGC
CTGAACAAGG CAGCTTGA
|
|---|
| Protein sequence | MSPAAQAPEV QTRREGAVLV VSINNPPVNA LGQAVRAGLL AAVEQAEGDA AVRALLIVGE
GKAFIAGADI REFGKPPVPP SLPEVCNRLE SCGKLVVAAI HGAALGGGLE VALSAHYRLA
LPAASLGLPE VNLGLLPGAG GTQRAPRLMG VKAAAELMLS GKHLSAKAAA AAGLVDRLVE
GTDPVAAGLA YANELLAQGA QPRRTRDLKI ADQAAARAEL DALALETAKK TRGLFSPGKI
VECVRAAVEL PFDEGIAKER ALFVECLNSP QRQGLVHAFF AERETAKIPE AQAAAPRHFA
KIAIIGGGTM GAGITVSALD AGLTVTMIER DAESIARGQK NVEKVYDGLI AKGRMTAEGK
AAILARYTPS TRYDDIADVD LVIEAVFEDL EVKKAVFKEL DRVCKPGAVL ATNTSYLDID
AIAAATSRPQ DVIGLHFFSP ANIMKLLEIV VPAKVAPDVV TTAFALAKKM KKVPVRAGVC
DGFIGNRILA VYKQAADYLM EDGASPYEID EAVRGFGFAM GPFQVTDLAG GDIGWATRKR
RAATRDPQAR YVEVADRVCE RGWFGQKTGR GFYLYPQGAR VGQPDPEVLA IVDAERAKKG
ITPRQFTADE IMRRYMAAMV NEGAKVVQEG IALRPLDVDV TFLSGYGFPR WRGGPMKWAD
MTGLDKVLAD IRAFAKEDPL FWKPAPLLEQ LVAEGRNFDS LNKAA
|
|---|
| |