Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_2998 |
Symbol | dapF |
ID | 7385443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | - |
Start bp | 3194658 |
End bp | 3195536 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643656308 |
Product | diaminopimelate epimerase |
Protein accession | YP_002554431 |
Protein GI | 222112167 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACATCC GCTTCACCAA GATGCAGGGC GCGGGCAACG ACTTCGTGGT ACTTGACGAG ACGCAGGGAC GCCTGGGGCT CACGCCCGCG CAGTACCGCT TTCTGGCCGA CCGCCACTTC GGCGTGGGCG CCGACCAGAT CCTCACCGTG CGCCCCTCGC CCGGCGCGGG CATCGACTTC GAATACGTGA TCCACAACGC CGACGGCGGC CAGGTGGAGC AGTGCGGCAA CGGCGCACGC TGCTTCGCGC GCTATGTGCG CGACAAGGGC CTCACCGCGC AGGACACGAT CCGCGTGCAG ACCATGGCCG GCGTCATCGC CCCGCACCTG ACCGCCGACG GCCGTGTGAC GGTGGACATG GGCCGCCCCG AGCTGGAGCC GGCGCGCGTG CCGTTCGACA CCACGGGCCT CGCGCCCGTG TCGCAAGGTT CAGGCCAAAA ATGGCCTCTG GCGCTTGATG GACAGGCGTC AGAAGCTACG CTATTAGTAG CAGTGGTGTC CATGGGCAAC CCGCACGCCG TCCAGTTGGT CGACGATGTG GACACTGCCC CCGTGGCGCA GACCGGTCCC TTGATCGAAA GCCACCCGCG CTTTCCCCAG CGCGTGAACG CGGGCTACCT GCAGATCGTG AACCGTGGTG AAGTGCGCCT GCGCGTGTAC GAGCGCGGCG CGGGCGAGAC GCTGGCCTGC GGCACGGGCG CCTGCGCCGC CGTGGTGGCC GGCATCCGCC TGGGGCTGTT GGATGCGCGC GTGCAGGTGC ACACGCGGGG CGGCCTGCTC ACCATCGACT GGGCCGGCGG CTTGCAAGAC CCCGTGTTCA TGACCGGCCC CGCTACCACC GTCTTCGAAG GCGAGATCGA CATTCCGGAC GCTTTATGA
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Protein sequence | MHIRFTKMQG AGNDFVVLDE TQGRLGLTPA QYRFLADRHF GVGADQILTV RPSPGAGIDF EYVIHNADGG QVEQCGNGAR CFARYVRDKG LTAQDTIRVQ TMAGVIAPHL TADGRVTVDM GRPELEPARV PFDTTGLAPV SQGSGQKWPL ALDGQASEAT LLVAVVSMGN PHAVQLVDDV DTAPVAQTGP LIESHPRFPQ RVNAGYLQIV NRGEVRLRVY ERGAGETLAC GTGACAAVVA GIRLGLLDAR VQVHTRGGLL TIDWAGGLQD PVFMTGPATT VFEGEIDIPD AL
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