Gene Dtpsy_2702 details

Gene Information

• Locus tag: Dtpsy_2702
• Symbol: rimM
• ID: 7382181
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax ebreus TPSY
• Kingdom: Bacteria
• Replicon accession: NC_011992
• Strand: -
• Start bp: 2880118
• End bp: 2880690
• Gene Length: 573 bp
• Protein Length: 190 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 643656011
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_002554137
• Protein GI: 222111873
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.294971
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCAGC TGCCTGTCCT GGAAACCGCC GAACTGCCCT CCGACGCCGT GGAGGTGGGC 
CGCATCACCG ATGCCTGGGG CGTGAAAGGG TGGTTCAAGG TGCTGCCCTA CAGCAGCAAC 
CCCGAGGCAC TGCTCGCCGC CAAGTCCTGG CTGTTGCAGC CGGCGGAAAA GGGCGCCAAG 
AGTTTTTTCG CTGGCACCGT GCTGCTGCCC ATCCGGCAGG CGCGCACGCA TTCGGACTCG 
GTGGTCGCCT GGGCACAGGG TGTGGACGAC CGTGACGCAG CAGAGGCGCT GCGCGGCGCG 
CGCATCTTCG TGCCCCGCGC CACCTTCCCA GCGGTGGGCG ATGACGAGTA CTACTGGGTG 
GACCTGATTG GCCTGCCTGT GGTCAACCGC GAGGGCGTGG CGCTGGGCAC CGTGCGCGAC 
CTGCTGCCCA CGGGGCCGCA GACCACGCTG GTGCTAGCCT ACGAGCACGA AGGCAAGCCG 
CACGAGCGCA TGATTCCCTT TGTGTCGGCC TATGTGGACA AAGTGGACCT GGCGGGGCGC 
TGTATCACCG TGGACTGGCA ACCCGACTAT TGA 

 

Protein sequence

MPQLPVLETA ELPSDAVEVG RITDAWGVKG WFKVLPYSSN PEALLAAKSW LLQPAEKGAK 
SFFAGTVLLP IRQARTHSDS VVAWAQGVDD RDAAEALRGA RIFVPRATFP AVGDDEYYWV 
DLIGLPVVNR EGVALGTVRD LLPTGPQTTL VLAYEHEGKP HERMIPFVSA YVDKVDLAGR 
CITVDWQPDY