| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1667 |
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| Symbol | |
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| ID | 7384741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 1762724 |
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| End bp | 1765867 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643654984 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_002553125 |
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| Protein GI | 222110861 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.152528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGACAT CCAACGCACA GCGCTCGTTC CCCTGGCACT GGCTCCCCGG AGCGGCCGTG
GCGCTGGCCG GTTGCGCGGC AAGCTACGCG CTGTACCACC AGCAGCAATC CTCCATGCAG
GCCATCGCGC GGGTGCGTTT CGAGCAGGAG GCCCGGCTGT TTGTCGAGAC GCTGCAGCGG
CGCATGGAGT CCCACGCGGT TTTGCTGCAG GGCATGCGCG GCCTGCTGAC GGTGAATCCG
CAGCTGCGGC GCGCCGACTT CGAGCGCGTG GCGCGTGAGC TGGATCTGCA GCATTACCAC
CCCGGCGTGA AGAACATCAA CTTTACGCGG TACGTGCCCG GCCCCCGGCG GGCGGCCTTC
GAAGAGCAGG CGCGCTCCGA CCCGCATCTG GACGGCGACC TGCCGCGGGA TTTCGCCATC
CATCCGCAGG CCGTATTGCC CGACTATTTC GTGGTGGACT ACCTCTGGCC CCAGGGGGGC
AACAGCGGCT TGCAAGGGTT GGAGATCCAT TCCCAGCCAG CGAACCTCGA AGCCATGCGC
CGTGCGCGCG ACACCGGCGG GCTGGTCGCC TCCGCGCCGT TCGAGCTGCA CCAGGAAACC
GAGCACCGCA CGGGCGTCAT CATCCGCATG CCGGTGTTTG CCGAGCCGGC GGCCGGACAG
GCGGGGCCGG CGCGCTTTCT GGGGGCGGTG GGCGTGAGCC TGCGCATCTA CGACATCGTG
CATGCCGTGC GCACCGCGGG CAACATGCAG GGCCTGGCGC TGCGCATGGC GGACGTGGGC
CCCTTCAGCA GCGAGGAGCC TGCTCCGCCG CAATCCCTCT TTGAATCGGA GACGCGCGTC
GGCACCTCTG CCATGGAATA TGAGCAAAGC GTGCGCGTGG GCGGAAGGCG CTGGAGCCTG
CAGTTCCAGC CCGTCGTGCC GTTCCTCTCG CCGCAGGAGT CGCGCCTGCC CTGGCTGCTG
GGCTCCGGCG GCCTGTTGGT GACCGCACTG CTCACCGCGC TGGTATCGAT GCTGGTGCTG
CGGCGGTCGC AGGCACTGGA CCATGCCAAG GAGACCGATA CGGCCTTGCG CGAAAGCGAG
GCGCGCCTGC GCGCCGTGTT CAACCAGGCC GCGGTGGGCA TCGCCCAGAC CGACTCGCGC
ACCGGCCGCC TGGTGCGCAT GAACCAGAAG TTCTGCGACC TGCTGGGCTA CAGCGCGCAG
GAACTGCAGC AGATGCGCTT TCAGGACTTC AGCGAGCCCA GCGACCTGGC CGCGGACCTG
GAGCAATTGC AGCGGATGCT GGCCGGTGAG CTGAGCGAAT ACCGCATGGA AAAGCGCTAC
CGCCGCAAGG ACGGCAGCGA GGTGTGGGTG GACCTCATGG TCTCGCCGCT GCGCCTGGAA
GGCCAGCCCG AGCACCACCT TGCGGTGGTG CAGGACATCA GCAAACGCAA GCACATGGAG
CAGGTGCTGC GCCAGAGCGA GGAGCACCTG CGCAACATCC TGAACCACAT GCCCGTGGGC
GTGAACCAGG TGCAGGACGG CAAGATCGTG TTCCGCAACG ACCGTCATGT CCAGATCTGC
GGCTACGACA TACGCGAGGC GCCCGACGTG GACACCTGGT GGCGCCTGGT AATGCCCGAC
GCACGCCAAC GCGAGCATGC GCGCGAGGCA TGGCACGCCG CATGCACGGC GGCGCTGAAG
AACCCCGACG GTGCCATCCG TACCGTGGAA TGCGTGATCA CCGCCAAGTC GGGCGTGCGC
CGCGCGGTCG AGCTGTCCGG CATGATCCTG GGTGACTCGC ACATCGTCAC CATGGTGGAC
CAGAGCCAGC GCAAGGCGGC CGAGGAAGAG GTGCGCTACC TGGCCTACAA CGATCCGCTC
ACCGGCCTGC CCAACCGCCG CCTGCTGCTG GACCGCCTGG AGCAGGCGCT GGCCATGAGC
GCCCGCCACC AGCTGTGCGG CGCGGTGATG ATGCTGGACC TGGACAACTT CAAGACCATC
AACGAGACAC AAGGTCCGGA CATGGGTGAC CGCCTGCTGC GCGAGGTGGC CCGGCGGCTG
CGCGACTGCG TGCCCGAGGA CGAAACCCTG GCGCGCCACG GCGGCGACGA GTTCGTCGTG
GTGCTCAAGG ACCTGGGCGC CGACCCGCAG GAGGCCGCCA ACCGCGCCGA GGAGATGGGC
CAGACGATCC TGGCGGCCAT TCGCGCGCCC TTCGACATCG ACGGTCAGCA GCACCACACG
GCGCTCAGCG TGGGCATCGC CATCTTCCGC GGGGTGCGCG AATCGGCGGA CGAGCTGCTC
AAGCGCAGCG ACCTTGCCAT GTACGAGGCC AAGGCCGCCG GGCGCGATAC GCTGCGCTTT
TTCGATCCAC AGATGCAGGC TGCCGTGTCC GAACGCGCGG CGCTGGAGGC GGACCTGCGC
GCCGGACTGG ATGCGGGACA GTTAGAACTG TTCTACCAGC CCAAGGTGGA CCAGGGCCGC
ATCACGGGCG CCGAGGCGCT GGTACGCTGG CGCCATCCGG ACAGGGGCTT CATCTCGCCA
GCGGAATTCA TTCCCTTGGC GGAAGAAAGC GGACTGATCC TGCGCGTGGG CGAGTGGGTG
ATGCGCAGCG CCTGCGCACA GCTGGCGCAG TGGAGCGCGC ACCCCGTGCT GGGTGAGCTC
ACCGTCGCGG TGAACGTGAG CCCGCGCCAG TTCCACGAGG GTAGCTTCGT GCCCCAGGTG
CTGGAGGCGC TGGCCGCCTC GGGCGCCGAC GCGCGCCGCC TGCGGCTGGA ACTGACCGAG
GGCATGCTGC TGCAGGACGT GGAGGACACG ATCGCCAAGA TGGTGCAGCT GCGTGGCTAC
GGCGTGGGCT TCTCGCTGGA CGACTTCGGC ACGGGCTACT CGTCGCTGGC CTACCTCAAG
CGCCTGCCCC TGCACGAGCT GAAGATCGAC AAGAGCTTCG TGCGCGACGT GCTCACCGAC
CCCAACGATG CCGTGATCGC ACGCACGATC GTCGCCCTGG GCACCAGCCT GGGCCTGCGG
GTGGTGGCCG AGGGCGTCGA GACCGAGGCG CAGCGCGCCT TTCTGGAGCG CAACGGCTGC
CATGCCTGGC AGGGCTATCT GCTCAGCCCA CCGCTGCAGG CCGCGGCGTT CGAGGCCTTG
GTGCTGAAGC GGGCCGGCGT CTGA
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| Protein sequence | MQTSNAQRSF PWHWLPGAAV ALAGCAASYA LYHQQQSSMQ AIARVRFEQE ARLFVETLQR
RMESHAVLLQ GMRGLLTVNP QLRRADFERV ARELDLQHYH PGVKNINFTR YVPGPRRAAF
EEQARSDPHL DGDLPRDFAI HPQAVLPDYF VVDYLWPQGG NSGLQGLEIH SQPANLEAMR
RARDTGGLVA SAPFELHQET EHRTGVIIRM PVFAEPAAGQ AGPARFLGAV GVSLRIYDIV
HAVRTAGNMQ GLALRMADVG PFSSEEPAPP QSLFESETRV GTSAMEYEQS VRVGGRRWSL
QFQPVVPFLS PQESRLPWLL GSGGLLVTAL LTALVSMLVL RRSQALDHAK ETDTALRESE
ARLRAVFNQA AVGIAQTDSR TGRLVRMNQK FCDLLGYSAQ ELQQMRFQDF SEPSDLAADL
EQLQRMLAGE LSEYRMEKRY RRKDGSEVWV DLMVSPLRLE GQPEHHLAVV QDISKRKHME
QVLRQSEEHL RNILNHMPVG VNQVQDGKIV FRNDRHVQIC GYDIREAPDV DTWWRLVMPD
ARQREHAREA WHAACTAALK NPDGAIRTVE CVITAKSGVR RAVELSGMIL GDSHIVTMVD
QSQRKAAEEE VRYLAYNDPL TGLPNRRLLL DRLEQALAMS ARHQLCGAVM MLDLDNFKTI
NETQGPDMGD RLLREVARRL RDCVPEDETL ARHGGDEFVV VLKDLGADPQ EAANRAEEMG
QTILAAIRAP FDIDGQQHHT ALSVGIAIFR GVRESADELL KRSDLAMYEA KAAGRDTLRF
FDPQMQAAVS ERAALEADLR AGLDAGQLEL FYQPKVDQGR ITGAEALVRW RHPDRGFISP
AEFIPLAEES GLILRVGEWV MRSACAQLAQ WSAHPVLGEL TVAVNVSPRQ FHEGSFVPQV
LEALAASGAD ARRLRLELTE GMLLQDVEDT IAKMVQLRGY GVGFSLDDFG TGYSSLAYLK
RLPLHELKID KSFVRDVLTD PNDAVIARTI VALGTSLGLR VVAEGVETEA QRAFLERNGC
HAWQGYLLSP PLQAAAFEAL VLKRAGV
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