| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1478 |
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| Symbol | |
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| ID | 7385120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 1550307 |
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| End bp | 1552529 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643654795 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002552940 |
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| Protein GI | 222110676 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCATC CGTCCACCGC CCTGGCGCAG GACCCAGGGC AGGTTTCTCC CGGGGCGATG
CAGCGCGTCC TGCGCGAACA GCAGACCTTG CTGGACAGCG CGGGCGTCGG GATCGTGTTC
ATTCGCAACC GCGCTTTGGT GCGGTGCAAC CAGCGCTGCG CAGAGATCTT CGGGCTACCC
TCGCCCGAAG ACGCGATTGG CCGAAGCAGC GAAGCCCTGC ACCCAAGCCG GGGAGCGTTC
CGCGAACTCG GCCGCGCCGC TTATCCGACC CTCGCGCGCG GTCAGGCGTA TCGCACGGAG
CGCCAGCTGA AACGCTGCGA CGGCCAACTG TTCTGGGCGC ACCTCACCGG GCGATTGATC
AACCCCCGGG ACAGCCGCGA AGGGTCCATC TGGATCATCG ACGACATCGA CGAGCAAAAG
CGTGCTCAGG CGCAGTTGCA GGCGGCCTTG TGGGAAAAGC AGGTGCTGTT CGACAGTGCC
ATGGTGGGCA TCGTCTTCCT GCAAGAGCGG CGCATGACAC GGTGCAACCG CCATTTCGAG
CAGATCCTGG GGTACGGCCC GGGCGAACTG GCAGGGTCTT CGTCGCGGCG GTGGTATTTG
AGCGACGAAG ACTGGCACGA GGCCGGGGTG CGCTGCTATG CGCCGCTGGT GCAGGGACAG
GCCTTCGAAG GCCAGATGGT CTTGCGCACC CGCGATGGGC GCGCTATTGA ATGTGAGGTA
CGCAGCAAGG CCGTCGATCC GTCGAATGTC GCGCAGGGCT CCATCTGGAT CGTGATGGAT
GTGAGCGAGC GATTGCGCAT TCAGAGGCAG CTCGCGGGCA TGCATGGCGA ACTGGAGCAG
CAAGTGCGCG ACCGCACGCG CGAGTTGCAG GAGACAGTGG GCAACCTGCA CCGCGAGATC
CAGGACCGTC AACGCGACCA GGAACGTATC TACTGGATGG CGCACTACGA CGCGCTCACC
GAACTGCCCA ACCGCGTCCT TCTGGCCGAG CGCGGTCAGG ACGCGATCCG CCACGCGCAA
GAGTCCGGTG CGCCCCTGGC CGTGATGTTC CTGGACTTGG ACAACTTCAA GCACGTGAAC
GACTCGCTGG GCCATCGCAT CGGCGATGCA CTGTTGGTGG AAATCGCACA GCGCCTGCGC
ACCACGGTGC GGCAAAGGGA CACCGTGGCG CGCCTAGGGG GTGACGAGTT CGTGCTCCTG
CTACCCGGCG CCAACGCGCA AGGCGCCGCG CGGGTGGCGG CCAAGATGCA GGAAGCAGCC
CTGCAGCCCG TGCACATCCA GCACCATGAA TTGTCGCTGG CCCTGTCCAT GGGGATTGCG
CTCTTTCCTG AGCATGGGAG CGATTTCGAG ACCCTGATCC AGTCGGCCGA TACCGCGATG
TACCGCGCCA AGGCGGACGG ACGCAACAGC TTCCGGTTCT TCACGCCCAC GATGCAGGCG
CAGTCGGCCC GAGCGCTGCA GTTGACCAAC GCGCTGCGGC GGGCTTTGGA GCGCAACCAG
TTGTCGCTGC ATTACCAACC CCAGGTGTCC ATAGCGACGG GCCGGGTCTG CGGCGTGGAG
GCGCTGCTGC GCTGGCATCA CCCAGAGCTG GGCGCGGTAT CGCCGGCAGA ATTCATTCCG
GTGGCAGAAG ACACTGGGCA AATCCTGCCC ATTGGCGAGT GGGTGCTGCG CACGGCGCTG
GCGCAGTTGC GCACCTGGCA TAGCCAGGGA CTTCCGGCCT TGACGATGGC AGTGAATCTG
TCCGCCGTGC AGTTCCGCCA GCCGCAGTTG CTGGAGCTGG TGGACCGGCT CCTCGCCGAG
TACGGAGTGC AGCCCCATCT GCTGGAGCTG GAACTGACCG AGAACGTGGC CGTCGCGGAC
CCCCACGCCG CGATCGCGAC GATGGACCAG CTCCACGCCA AAGGCGTGCG CCTGTCGATG
GATGACTTTG GTACCGGCTA TTCGTCGCTG AGCCATCTCA AGCGATTCCA GATCTACCGG
CTGAAGATCG ACCAGTCCTT CGTGCGCGAC CTGGACCATG ACGGCAACGA CCGCGCCATC
GTCAGCGCCA TCATCCGCAT GGCGCAGGCG CTGGGCATGC GCACCACGGC CGAGGGGGTA
GAAACCGCCC ATCAGCTGAC GTTCCTGCGC GAACAGGGCT GTGATGAAGC CCAAGGTTTC
TATTTCAGCC GGCCCCTGGG GGCCCCGCAT CTGCAGCAGT ATTTGCTGCA GCGCCCTGCC
TGA
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| Protein sequence | MSHPSTALAQ DPGQVSPGAM QRVLREQQTL LDSAGVGIVF IRNRALVRCN QRCAEIFGLP
SPEDAIGRSS EALHPSRGAF RELGRAAYPT LARGQAYRTE RQLKRCDGQL FWAHLTGRLI
NPRDSREGSI WIIDDIDEQK RAQAQLQAAL WEKQVLFDSA MVGIVFLQER RMTRCNRHFE
QILGYGPGEL AGSSSRRWYL SDEDWHEAGV RCYAPLVQGQ AFEGQMVLRT RDGRAIECEV
RSKAVDPSNV AQGSIWIVMD VSERLRIQRQ LAGMHGELEQ QVRDRTRELQ ETVGNLHREI
QDRQRDQERI YWMAHYDALT ELPNRVLLAE RGQDAIRHAQ ESGAPLAVMF LDLDNFKHVN
DSLGHRIGDA LLVEIAQRLR TTVRQRDTVA RLGGDEFVLL LPGANAQGAA RVAAKMQEAA
LQPVHIQHHE LSLALSMGIA LFPEHGSDFE TLIQSADTAM YRAKADGRNS FRFFTPTMQA
QSARALQLTN ALRRALERNQ LSLHYQPQVS IATGRVCGVE ALLRWHHPEL GAVSPAEFIP
VAEDTGQILP IGEWVLRTAL AQLRTWHSQG LPALTMAVNL SAVQFRQPQL LELVDRLLAE
YGVQPHLLEL ELTENVAVAD PHAAIATMDQ LHAKGVRLSM DDFGTGYSSL SHLKRFQIYR
LKIDQSFVRD LDHDGNDRAI VSAIIRMAQA LGMRTTAEGV ETAHQLTFLR EQGCDEAQGF
YFSRPLGAPH LQQYLLQRPA
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