| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1145 |
|---|
| Symbol | |
|---|
| ID | 7384577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 1203865 |
|---|
| End bp | 1205193 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643654466 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_002552618 |
|---|
| Protein GI | 222110354 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.284786 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCGCA AAGACATACG CAAGGGATGG ATATGGGCGG TATCCACGCT TTGGGCCGGC
ACCGTGCTAG CCCAGCCAGT AGCCGCCCCT CACGTCCCAT CCAGACCAGA CAGCCACATG
GTCGCCCAAT TGTGGGAGTC AGCTTGGCAG CGGCAGCCAG AAGCCGCTGG AGAAGGCGCC
TGGCAGCAGG CCGCCCAAGC ACGCCAAGAG ACGGCCGGCA GTTGGGTGGC AGGTCCGATG
GCGCTGGAAG CCTCCACCAA AACTGATCGG TTCAACAACC GCAACGGACA GCGCGAATAT
GAAGTCGGGG TGGCTATTCC CCTTTGGATG CCTGGTGAGC GCGCCTCGTC GGCACGCTGG
GCGGACGCGG AAAGCCTCGC GCTATCCAGC CGGATGCTGG CCGCCAAGCT ACGCACGGCC
GGACAGGTTC GCCAGGCATG GTGGGCATGG CAGCGTGCCC AGGCCGAATT GGTGGCGGCG
CAGGATCGCA CCCGCAGCGC GGACGAGTTG GCGCAAGATG TGGCTCGCCG GGTTCGCGCG
GGCGACCTGG CGCAAGCCGA CAGAAACCAG GCCGATGGCG CCTTGGCGTC GGCTCGTAGT
GCCCTGGCCA TTGCTCAGGC CGAAGAAATC ACGCAGCGCG AGGCGTTGTT GGCACTGACC
GGCATCGAGA GTATCCCGTC GCAGGCCGAT TCCGCGCAGC CGGAGCAGTC AGGTGTCCGA
GTTCAACCGG CATCGGCACA GCCGTCCGGC GCGTTGTTGG GTAACCACCC TGCGCTGCTG
GAACTGCAGC ACAAGGCGCT GGCGGCCCGC CGCTCTGCGG AACTGGTGTC CCATCAGAAG
TACGCCAACC CCGAACTGAC CCTGGCGACC ACGCGGGATC GGGGCGGCTA CGGCGAACGC
TACAACCAGA CGATCACGGT GGGTGTGCGC ATTCCCTTCG GTACGGGTAG CCGTCATACC
GAGCAATTGT CCAGCGCCAA TGCGCAGGCA CTGGAGGCTG AGTCGGCACT CGCGGCCCAG
CGCACCCGGC TACTCTCGGA AATTCGAACT GCCCAATCGC GCGAACTGGC AACCAGCACC
CAGATGCAGG CCGCTTCGGA GCGCCAGCGA CTAGCCCAAC AAACGCGCAC CTTCTACCAA
AAGTCGTTCG CGATGGGCGA GACGGACATG CCGACACGCC TTCGCATCGA GCAGGAGGCC
ACCGAGGCCG AGCGCGCGGC GCTGCTCGCC AAGGTGGAGC ATGCCGCGGC CATCTCGTCC
CTGTTGCAGG CACAAGGCAC GCTGCCGCAG CCGACCGAGA CTTTCACTGA CATCTCCGGC
ACGCGCTGA
|
|---|
| Protein sequence | MLRKDIRKGW IWAVSTLWAG TVLAQPVAAP HVPSRPDSHM VAQLWESAWQ RQPEAAGEGA
WQQAAQARQE TAGSWVAGPM ALEASTKTDR FNNRNGQREY EVGVAIPLWM PGERASSARW
ADAESLALSS RMLAAKLRTA GQVRQAWWAW QRAQAELVAA QDRTRSADEL AQDVARRVRA
GDLAQADRNQ ADGALASARS ALAIAQAEEI TQREALLALT GIESIPSQAD SAQPEQSGVR
VQPASAQPSG ALLGNHPALL ELQHKALAAR RSAELVSHQK YANPELTLAT TRDRGGYGER
YNQTITVGVR IPFGTGSRHT EQLSSANAQA LEAESALAAQ RTRLLSEIRT AQSRELATST
QMQAASERQR LAQQTRTFYQ KSFAMGETDM PTRLRIEQEA TEAERAALLA KVEHAAAISS
LLQAQGTLPQ PTETFTDISG TR
|
|---|
| |