Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_1085 |
Symbol | |
ID | 7382894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | + |
Start bp | 1132770 |
End bp | 1134077 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 643654400 |
Product | pseudouridine synthase |
Protein accession | YP_002552562 |
Protein GI | 222110298 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.126004 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGGTC ACTCGCCTTT GCCCGCATCG GAGGCTGCTG CGCCGCGCGG GCCCCGCAAG CGCAAGTCTG CGGAAGGCGC GCTTCAGGAG AATGTGGCAG TGCCGCAACT GAGCGCTGAC GGTGCCCAAT CGGACGTGAA GATGCAAGAA GTGCATGAGC AAGGCGCAGC TGTTGAGGTG CCACGACAGC CCAGCGGCCA TGCCGCCAAG CGCGCGCCGA AGGGCGATGG CTATCAGTTT GCCGACGTGG TGTCGGGTCA GTTCGACGAG GATGAAGCCA ACGCCGAGCT CGCCCCCGCC AAGCGGGTGC TGCTTCCCCA GCCAGAAACC CCCAAACTTC ACAAGGTGCT TGCCCAGGCG GGCATGGGGT CTCGGCTGGA AATGGAGCAG CTCATCCTGG AAGGGCGTAT TTCCGTCAAC AACGAGCCGG CCCATATCGG ACAGCGCGTG CAGTTTGGGG ACCAGATAAA GGTCAACGGC AAACCCATCC GCTTCCGTAT TGCACCACCG CCGGTACGCG TGATTGCATA CCACAAGCCG GTGGGCGAAG TGGTTACGCA TGACGATCCG CAAAACCGCC CCACGGTGTT TCGCAAACTA CCCCGGCTGC AGCAGGGCAA ATGGCAATCC GTCGGGCGTC TGGACCTGAA TACCGAAGGT TTGTTGCTAT TTACCAGTTC GGGGGAGCTT GCGAACAAGT TGATGCACCC CCGCTTCGGG CTGGAGCGTG AATATGCGGC CCGCGTGCTG GGTGCGTTGA GCACCGAGGA AAAGCAGCGC TTGCTGGAAG GCGTGCCGCT GGAGGATGGC ATGGCTTCCT TTGGCTCCGT GGAAGACGGC GGCGGCGAGG GCGCCAACTG TTGGTACCGG GTCACCATCT CTGAAGGCCG TAACCGCGAG GTCCGCCGTA TGTTCGAGGC GGTAGGACAT GCGGTGAGCC GGCTGATTCG GATTCGCTAT GGGGCCATGA TGCTGCCGCG CGGGCTCAAG CGCGGGGCGT GGCTGGAGCT TGATGAGCGC GACATTCGTG CCCTGATGCA GGCGGCAGGG GCAACGCTGG ATGGTGGTGG TGCGCGCCCC ACTAGTGGCC AGGGCAGGGG CGGCCGCAAA GGCGATCGTC GATCCGCGGG GCCCGGCAAG GCATCTGGCA GTGGGCGTGA CAAGACAGGG GGGCGTGCGG GGCGATCGCC CTCACCGAAT GCCCAGCCGG ACCCGATGAA GACGTCGCTT GGCTATATCG GGGCCGACAG TTTCTCGCGC CATCGCCAAC AGCAACGCAA CAACGGGCCG CGCCGCGGCG GCCGTTAG
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Protein sequence | MAGHSPLPAS EAAAPRGPRK RKSAEGALQE NVAVPQLSAD GAQSDVKMQE VHEQGAAVEV PRQPSGHAAK RAPKGDGYQF ADVVSGQFDE DEANAELAPA KRVLLPQPET PKLHKVLAQA GMGSRLEMEQ LILEGRISVN NEPAHIGQRV QFGDQIKVNG KPIRFRIAPP PVRVIAYHKP VGEVVTHDDP QNRPTVFRKL PRLQQGKWQS VGRLDLNTEG LLLFTSSGEL ANKLMHPRFG LEREYAARVL GALSTEEKQR LLEGVPLEDG MASFGSVEDG GGEGANCWYR VTISEGRNRE VRRMFEAVGH AVSRLIRIRY GAMMLPRGLK RGAWLELDER DIRALMQAAG ATLDGGGARP TSGQGRGGRK GDRRSAGPGK ASGSGRDKTG GRAGRSPSPN AQPDPMKTSL GYIGADSFSR HRQQQRNNGP RRGGR
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