| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_0021 |
|---|
| Symbol | |
|---|
| ID | 7382712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | + |
|---|
| Start bp | 20851 |
|---|
| End bp | 24528 |
|---|
| Gene Length | 3678 bp |
|---|
| Protein Length | 1225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643653339 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_002551510 |
|---|
| Protein GI | 222109246 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.363406 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTATCA GCGATTCCAC TGGAACCCCG TCAGCCCACC CGGCCGAGGC AGGAGGCCCG
GCCGCAGCGG TTCAGGCGCA CGACGAGGCA GCGGCGCATG CACTCCTGCT GCAGCTCCAG
CAACTGATCA CAGACCTGCA GCTGCCCCTG GAGCACGTCC TGGCGCAGGC CGCCCAAGCC
GCCTGCGCGA TCACGGGCGC GGTCGGGGCA ATGATCGCGT TGCGCGAAAA CGATGCGCTG
GCCGTGCGCG CCAGCGTGGG TGCGCCGCCC CTGCCGGCGA TCGGCACCCG CGTGCCGCTG
GACGCCTGCG CATCCTGGCA GGGCATGGAG CAAGCCGCAC GCGCGGGCCT ACAGGCAGCC
ACGGGCGCCC CCGCGCAGGA TGTGGGAAGT GCGCAGCCTC CCCACCGGCG GGTCAGCATG
CCGCTGGGCA GCGGCGCGCT GCTCGCGGGC CTGCTCCAGG TGAGGGTGCC CCAGGGCGCA
GCGCTGGATG CGCAGCATCT GCTGCACCTG CGCATCCTGG CCGAGTCGCT GGGCGCCATG
TTGCAGTTGC GGCGCGTGGA CGCGCAGCTG CGTGCGTCCG AGCAGCAGTA CCGCACGCTC
TTTGCCGAAC ATCCGCAGCC CATGTGGGTC TGCGACCGCG ACAGCCTGCG TCTGCTGGCG
GTGAACCACG CCATGGTCCG CCACTACGGC CATGCGGAGC AGGAGCTGCT GGGCATGGAG
TTGCGCGCGC TCTGGTCCGC GGAGAACCAG GACGCGGCCA CCTGCGCACT CGACATGCTG
CGCCGCGAGG CCCATGCACC CGGGTCTCCC GCGTCCGCAC CACGGCTGTG GCGCCACGCA
CGCAAGGACG GCGCCGCCCT GGACGTGGAA GTCGTCGTGG GCGACACGGA TTTCGGCGGG
CGCCCGGCGT GGCAGATGCT GGCCAGCGAC GTGACCGAGC GCTGCCGTAT CGAGGACGAG
CTGGCGCGCG TCAACCGGGC CAAGCGCATG CGCGGCGCTT GCAGCGAGAC ACTGGTGCGT
GCCACCAGCG AGTCCGATCT ACTGCACGGC GTGGCCGTGG AGATCGGCGG CTACCGCATG
GGCTGGGTGG GCATGGCACG CGACGATGCG CACAGGCGCA TCGAGCCCGT GGCGCACGCG
GGCGTCGCCC AAGCCCATGA CTACACCGAA CACCTGCACC TGAGCTGGTC GGTGCAGGAG
CCGGGCGGCA ACGGCCCGGC AGGCGTGTGC GTGCGCAGCG GCCGCACGGT GATCGTGCAC
GACGTGCACC ACAGCCCGGC TTTCAGTCAC CTGGCGGACC GCATGGCCCA GCTGGGCTTT
CACGCCGTGG TGTGCCTGCC GCTGCGCAAC GCCGAGCGCA CCTTCGGCCT GCTGTACCTG
TATGCGCCCG AGGTGCTGCA CCTGGGGGTG CAGGAGACGC AGTTGCTGGA GGCCATGGCC
GCCGACCTCG CGTTCGGCAT CGAGAACCTG CGTGCCCGCG CGGAGCAGCA GCGCCTGCAG
GCCACGTTGG TCAAGGTGGC CACCGCCGTC TCGGCCGGCG TGGGCGCGGC GTTCTTCGAC
CATCTGGCGC AGCACATGGC CGAGGCGCTG GGCGCCCAGG TGGCCTGCGT GGGCCGCTTC
CTGCCGGCCG CCCCCGGGCA GGCGCGGCGG GCGGTGGCGC TGTCGCACGT GGTCGATGGC
GTGACCCAGC CCAATGCCGA ATATGTACTG GAAGGCACGC CGAGCGAGCG GCTGCTGACC
CAGCGCTCGC TGGTCATCCG CGACCGTGCG CGCGAGCGGT TCCCGCGCGC GCCGGTGCTC
GCGCGCACCG GCGCGCGCAG CTACGTGGGC CAGCAGCTCA CGGCCAGCGA CGGCACGCCC
ATCGGCATGA TCTTCGTGGT GTTCCGCCAG GCGCTGGAGC GCAGCCGCTT CGTCAGCAAC
ACGCTGCAGA TCTTCGCCGC GCGCGCGGCC GCGGAACTGC AGCGCCAGAC GGACGACCAG
CGCATCCGCC AGCAAGCATC GCTGCTGGAC AAGGCGCGCG ACGCCATCAT CGTGCGCGAC
CTGGAGCACC GCATCACGTT CTGGAACGAG GGCGCAGAGC GCATGTACGG CTGGTCCCGC
GAGGAGGTCC TCGGCCGCTC CATCGCCACG CTGCTGTATC AGAACCCGGA GGACTTCCTG
CGCGCCACCC AGCACGTGAT GCAGCACGGC GTGTGGAGCG GCGAGATCCT GCAGTGCGAC
CGCGCGGGCC GCACCCTGGA AGCCGAAGGC CGCTGGACGC TGGTGCGCAA CGACCGTGGC
GAGCCCGAGT CGGTCCTCGC GATCAACGCC GACATCGGCA CGCGCAAGCA CCAGGAGCGC
GAGATCCAGC GCCTGGCCTT CTTCGACCCG CTCACCCACC TGCCCAACCG CGTGCAGCTG
CTGGACCGCG TGGACCAGGC CCTGGCCAAG GCGCAGCGCC TGGAGCAGGG CGGGGCGCTG
CTGTTCATCG ACCTGGACAA CTTCAAGACC CTCAACGACA CGCTGGGCCA TGACCAGGGG
GACGAGCTGC TGCAGATCGT GGCGCAGCGG CTGAACACCT GCGTGCGCAG CGCAGACACG
GTGGCGCGCC TGGGTGGCGA CGAATTCGTG GTGCTGGTGG AGCAGCTCAG TGCGCACAGC
GACACGCTGG CGGAGCAGGC GGGCGCCGTG GGCGAGAAGA TCCTCGCCGT GCTCAGCGCC
CCCTATGCGC TCACCGGGTA CCAGTACCGC AGCACGCCCA GCATCGGCAT CGCACTGTTC
AACCACGCGC CCACCACGGT GGGCGAACTG CTCAAGCAGG CCGACCTGGC GATGTACCAG
GCCAAGACCG CGGGACGCAA CACGCTGCGC TTTTTCAACC CGAGCATGCA GCATGCCGTG
GCCGAGCGTG CCTCGCTCGA GGCGGATCTT CGCAACGCGC TGGCGCAGAA AGAGTTTCTG
CTGCACTACC AGCCGCAGAT CAATGCGCGG GGCGCGATCG TGGGCGTGGA GGCGTTGCTG
CGCTGGGCGC ACCCGCGGCG CGGCATGGTG TCGCCCGGGC GGTTCATTCC GCTGGCCGAG
GAGACCGGCC TGGTGCTGCC GCTGGGGCAC TGGGTGCTGC ACACGGCGTG CTCGGTGCTG
GCCGATTGGC AGCGGGTGCC GGCGCTGGCG CCGCTGACCA TGGCAGTGAA CGTGAGCTCG
CGCCAGTTCC GCGATGCGGG TTTCGTGGAC GACGTGGCGG GCGTGCTGGC CGCCACCGGC
GCGCCGGCCG CCCAGCTCAA GCTGGAGCTG ACCGAGAGCC TGCTGGTGGA AGACTTGGCC
GCCACCATTG CCACCATGGC GGCGCTGCGC GCGCTGGGCG TGGGCTTTTC GCTGGACGAC
TTCGGCACCG GCTACTCGTC ACTGGCCTAC CTCAAGCGCA TGCCGCTCGG GCAGCTCAAG
ATCGACCAGA GCTTCGTGCG CGACCTGCTC ACGGACCCCA ACGACGCGGC CATCGTGCGC
ACCATCATCG GCCTGGCCGC CAGCCTGGGC CTGGAGGTGA TCGCCGAGGG CGTGGAGACC
AGCGCGCAGC GCGACTGGCT GGCGCACGCA GGCTGCGCGG TGTACCAGGG TTACTTCTTC
AGCCGGCCGC TGCCGCTGGA TCTGCTGGAG CAACTGCTGC ACGACCACAT CGCCGCAGCC
CGCACGCCGC CTCTTTAA
|
|---|
| Protein sequence | MPISDSTGTP SAHPAEAGGP AAAVQAHDEA AAHALLLQLQ QLITDLQLPL EHVLAQAAQA
ACAITGAVGA MIALRENDAL AVRASVGAPP LPAIGTRVPL DACASWQGME QAARAGLQAA
TGAPAQDVGS AQPPHRRVSM PLGSGALLAG LLQVRVPQGA ALDAQHLLHL RILAESLGAM
LQLRRVDAQL RASEQQYRTL FAEHPQPMWV CDRDSLRLLA VNHAMVRHYG HAEQELLGME
LRALWSAENQ DAATCALDML RREAHAPGSP ASAPRLWRHA RKDGAALDVE VVVGDTDFGG
RPAWQMLASD VTERCRIEDE LARVNRAKRM RGACSETLVR ATSESDLLHG VAVEIGGYRM
GWVGMARDDA HRRIEPVAHA GVAQAHDYTE HLHLSWSVQE PGGNGPAGVC VRSGRTVIVH
DVHHSPAFSH LADRMAQLGF HAVVCLPLRN AERTFGLLYL YAPEVLHLGV QETQLLEAMA
ADLAFGIENL RARAEQQRLQ ATLVKVATAV SAGVGAAFFD HLAQHMAEAL GAQVACVGRF
LPAAPGQARR AVALSHVVDG VTQPNAEYVL EGTPSERLLT QRSLVIRDRA RERFPRAPVL
ARTGARSYVG QQLTASDGTP IGMIFVVFRQ ALERSRFVSN TLQIFAARAA AELQRQTDDQ
RIRQQASLLD KARDAIIVRD LEHRITFWNE GAERMYGWSR EEVLGRSIAT LLYQNPEDFL
RATQHVMQHG VWSGEILQCD RAGRTLEAEG RWTLVRNDRG EPESVLAINA DIGTRKHQER
EIQRLAFFDP LTHLPNRVQL LDRVDQALAK AQRLEQGGAL LFIDLDNFKT LNDTLGHDQG
DELLQIVAQR LNTCVRSADT VARLGGDEFV VLVEQLSAHS DTLAEQAGAV GEKILAVLSA
PYALTGYQYR STPSIGIALF NHAPTTVGEL LKQADLAMYQ AKTAGRNTLR FFNPSMQHAV
AERASLEADL RNALAQKEFL LHYQPQINAR GAIVGVEALL RWAHPRRGMV SPGRFIPLAE
ETGLVLPLGH WVLHTACSVL ADWQRVPALA PLTMAVNVSS RQFRDAGFVD DVAGVLAATG
APAAQLKLEL TESLLVEDLA ATIATMAALR ALGVGFSLDD FGTGYSSLAY LKRMPLGQLK
IDQSFVRDLL TDPNDAAIVR TIIGLAASLG LEVIAEGVET SAQRDWLAHA GCAVYQGYFF
SRPLPLDLLE QLLHDHIAAA RTPPL
|
|---|
| |