Gene Dtox_1913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtox_1913 
Symbol 
ID8428892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum acetoxidans DSM 771 
KingdomBacteria 
Replicon accessionNC_013216 
Strand
Start bp2024153 
End bp2026285 
Gene Length2133 bp 
Protein Length710 aa 
Translation table11 
GC content40% 
IMG OID645034243 
Productputative sigma54 specific transcriptional regulator 
Protein accessionYP_003191377 
Protein GI258515155 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0899132 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0546689 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTTC GGGAAATTAT GACCCCTGAT CCCTTAACTA TAAGTCCCAG TCATAAGGTT 
TGTGAGGTAG TAAACATTTT TATAGAAAAT AAGATAGATG GTGCCCCGGT ATTAGAAAAC
GGTAAATTAG TAGGTCTTTT TACCAAGAGT CATATTTATC GTGCGATAAG TAAGGGCATA
GATATGAATA CAAAGGTTGA AGCCTTAATG ACCCGGGAGA TTCTCACGGG CTATCCTGAT
GATGAGTTTG GTGACGTAGT AAATGCTACG GTACCCCGGT TGCCTGTTGT TGATGAAAAG
GGGCGGGTAG TGGGGATAAT TACCCGCGGC GATATTGCAA AAGCATTCTT TAATTCATAT
CGCAACATTT CTCTGGAACT TGATACGATT ATGAATTCGA CTCATAATGC GATTGTTTCG
GTTGATGAAA AAGGCATAAT CAAGGTTTGG AATTTGTCAG CAGCCAGATT ACTAGGTATT
GAGGCAGAAG CTGCTACCGG GAAAAATATA TTAGATGTAC TTTCTACCAG TAATCTAATG
GATGTAATTG AGACCGGAAA AGTTGAGACT TTAAAGAAAG TGAAACTTAA TGACCGTTAC
TTTATATCCA ACCGTTCTCC GATCAAAAAG GATGGTAAGA TTATTGGTGC CGTAGCGGTG
CTTCAGGATA TATCTGAGCT GGATAAAATG TCTAAGGAAC TATGTTATGT GAAGGAATTG
AATGAGGAAC TGGATGCCAT AGTCGAATCA TCTTTTGATG GACTGTTTAT AACCGACGGT
AAAGGAATTA TTTTACGTTA CAATAAGGCC TTTGAACTGC TGACAGGTAT CGATGCCCAT
GAATACCTGG GGTTAAGTGT GGAGGATATT AGAAGGGATG GTATTATCTC TGAACCTGTA
ACCTGCCATG TCTTGGAGGA GAAGAAATCA ATTACGATTA TGCAAACAAG TAAAACCGGT
AAGCTTACTC TGACGACGGG AAACCCGGTA ATTGATGCCA ACGGAGAAAT AATCAGAGTT
GTTTGTAATG TAAGAGATAT CACTGAACTA AATCTATTAA AACACAAGCT GAAAAAAGCG
CAAGGGCTAA GCCAGCACTA TGAAAACCAG CTTCGTACTT TGAAGTTACG GTATGATAAT
TCTGAAAATC TAGTCGTTAC TTCTGCCAAG ATGAGGAACC TGCTGGACAT GGTGGTAAGA
TTAGCCTCAG TTGACTCCAC TGTTTTAATC ACCGGTGAAT CTGGTACCGG TAAGGAACTA
ATTGCCGAGA TAATTCATAG TAATAGTTCA CGCCGGGATA AGCCATTTAT TAAGGTGAAC
TGTGGTGCTA TTCCTGAGAA TTTACTGGAA TCAGAGTTGT TTGGCTATGA TGGCGGGGCC
TTTACCGGGG CCAAGAAAGA GGGCAAATCA GGATATATTG AATTGGCTTC CGGGGGTACT
TTATTCCTGG ATGAGATTGG TGAAATGCCG CTAAATTTAC AGGTCAAGAT GCTGCGGTTT
TTACAAAACA AAGAAATTAT CCGGGTCGGC GGAACAAATT ATATAAATGT TGATGTGCGC
ATTGTAACGG CTACAAACAG GAACCTTTTA GAAATGGTGC AGCAAAAACA GTTTCGCGAG
GATCTTTATT ATCGATTGAA TGTAGTGCCT GTGCATATAC CGCCGCTGCG TGACAGGAAG
GATGATATAC CCCCGTTGGC AGCGCATTTC ATAGAGGTAT TTAACCACAA ATACAAAAAG
AATAAAAAGA TATCTCCAGG AGTAGTTGAT ATTCTCATGC AATATGACTG GCCCGGCAAT
ATCAGAGAAT TGGAAAACCT TATCGAGAGA ATGGTTGTTA CTACCATGGA TGATATAATC
ACCAGTGAGG ATTTACCTTC CTATCTGCGG GATAAAGTAG GGATTAGTTC TTCATATATT
ATTGTTTCGG GGATAGTGCC TTTAAGAGAT GCTGTAGAAA GTGTTGAGAA GCAGCTATTG
GAAAGAGCCT ATGCTAAGTA TCGAACTACC AGACAGATGG CTAAGGAATT AAAAGTTGAT
GCCTCTACTG TTGTCAGAAA AGCGGCAAAA TATTGTATTT TTAGAGATTC TGTACTTACT
AGCTTGCTTG CGGAAAACCA AATTGGAAAC TAA
 
Protein sequence
MKVREIMTPD PLTISPSHKV CEVVNIFIEN KIDGAPVLEN GKLVGLFTKS HIYRAISKGI 
DMNTKVEALM TREILTGYPD DEFGDVVNAT VPRLPVVDEK GRVVGIITRG DIAKAFFNSY
RNISLELDTI MNSTHNAIVS VDEKGIIKVW NLSAARLLGI EAEAATGKNI LDVLSTSNLM
DVIETGKVET LKKVKLNDRY FISNRSPIKK DGKIIGAVAV LQDISELDKM SKELCYVKEL
NEELDAIVES SFDGLFITDG KGIILRYNKA FELLTGIDAH EYLGLSVEDI RRDGIISEPV
TCHVLEEKKS ITIMQTSKTG KLTLTTGNPV IDANGEIIRV VCNVRDITEL NLLKHKLKKA
QGLSQHYENQ LRTLKLRYDN SENLVVTSAK MRNLLDMVVR LASVDSTVLI TGESGTGKEL
IAEIIHSNSS RRDKPFIKVN CGAIPENLLE SELFGYDGGA FTGAKKEGKS GYIELASGGT
LFLDEIGEMP LNLQVKMLRF LQNKEIIRVG GTNYINVDVR IVTATNRNLL EMVQQKQFRE
DLYYRLNVVP VHIPPLRDRK DDIPPLAAHF IEVFNHKYKK NKKISPGVVD ILMQYDWPGN
IRELENLIER MVVTTMDDII TSEDLPSYLR DKVGISSSYI IVSGIVPLRD AVESVEKQLL
ERAYAKYRTT RQMAKELKVD ASTVVRKAAK YCIFRDSVLT SLLAENQIGN