Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtox_1913 |
Symbol | |
ID | 8428892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum acetoxidans DSM 771 |
Kingdom | Bacteria |
Replicon accession | NC_013216 |
Strand | + |
Start bp | 2024153 |
End bp | 2026285 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 645034243 |
Product | putative sigma54 specific transcriptional regulator |
Protein accession | YP_003191377 |
Protein GI | 258515155 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0899132 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0546689 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGTTC GGGAAATTAT GACCCCTGAT CCCTTAACTA TAAGTCCCAG TCATAAGGTT TGTGAGGTAG TAAACATTTT TATAGAAAAT AAGATAGATG GTGCCCCGGT ATTAGAAAAC GGTAAATTAG TAGGTCTTTT TACCAAGAGT CATATTTATC GTGCGATAAG TAAGGGCATA GATATGAATA CAAAGGTTGA AGCCTTAATG ACCCGGGAGA TTCTCACGGG CTATCCTGAT GATGAGTTTG GTGACGTAGT AAATGCTACG GTACCCCGGT TGCCTGTTGT TGATGAAAAG GGGCGGGTAG TGGGGATAAT TACCCGCGGC GATATTGCAA AAGCATTCTT TAATTCATAT CGCAACATTT CTCTGGAACT TGATACGATT ATGAATTCGA CTCATAATGC GATTGTTTCG GTTGATGAAA AAGGCATAAT CAAGGTTTGG AATTTGTCAG CAGCCAGATT ACTAGGTATT GAGGCAGAAG CTGCTACCGG GAAAAATATA TTAGATGTAC TTTCTACCAG TAATCTAATG GATGTAATTG AGACCGGAAA AGTTGAGACT TTAAAGAAAG TGAAACTTAA TGACCGTTAC TTTATATCCA ACCGTTCTCC GATCAAAAAG GATGGTAAGA TTATTGGTGC CGTAGCGGTG CTTCAGGATA TATCTGAGCT GGATAAAATG TCTAAGGAAC TATGTTATGT GAAGGAATTG AATGAGGAAC TGGATGCCAT AGTCGAATCA TCTTTTGATG GACTGTTTAT AACCGACGGT AAAGGAATTA TTTTACGTTA CAATAAGGCC TTTGAACTGC TGACAGGTAT CGATGCCCAT GAATACCTGG GGTTAAGTGT GGAGGATATT AGAAGGGATG GTATTATCTC TGAACCTGTA ACCTGCCATG TCTTGGAGGA GAAGAAATCA ATTACGATTA TGCAAACAAG TAAAACCGGT AAGCTTACTC TGACGACGGG AAACCCGGTA ATTGATGCCA ACGGAGAAAT AATCAGAGTT GTTTGTAATG TAAGAGATAT CACTGAACTA AATCTATTAA AACACAAGCT GAAAAAAGCG CAAGGGCTAA GCCAGCACTA TGAAAACCAG CTTCGTACTT TGAAGTTACG GTATGATAAT TCTGAAAATC TAGTCGTTAC TTCTGCCAAG ATGAGGAACC TGCTGGACAT GGTGGTAAGA TTAGCCTCAG TTGACTCCAC TGTTTTAATC ACCGGTGAAT CTGGTACCGG TAAGGAACTA ATTGCCGAGA TAATTCATAG TAATAGTTCA CGCCGGGATA AGCCATTTAT TAAGGTGAAC TGTGGTGCTA TTCCTGAGAA TTTACTGGAA TCAGAGTTGT TTGGCTATGA TGGCGGGGCC TTTACCGGGG CCAAGAAAGA GGGCAAATCA GGATATATTG AATTGGCTTC CGGGGGTACT TTATTCCTGG ATGAGATTGG TGAAATGCCG CTAAATTTAC AGGTCAAGAT GCTGCGGTTT TTACAAAACA AAGAAATTAT CCGGGTCGGC GGAACAAATT ATATAAATGT TGATGTGCGC ATTGTAACGG CTACAAACAG GAACCTTTTA GAAATGGTGC AGCAAAAACA GTTTCGCGAG GATCTTTATT ATCGATTGAA TGTAGTGCCT GTGCATATAC CGCCGCTGCG TGACAGGAAG GATGATATAC CCCCGTTGGC AGCGCATTTC ATAGAGGTAT TTAACCACAA ATACAAAAAG AATAAAAAGA TATCTCCAGG AGTAGTTGAT ATTCTCATGC AATATGACTG GCCCGGCAAT ATCAGAGAAT TGGAAAACCT TATCGAGAGA ATGGTTGTTA CTACCATGGA TGATATAATC ACCAGTGAGG ATTTACCTTC CTATCTGCGG GATAAAGTAG GGATTAGTTC TTCATATATT ATTGTTTCGG GGATAGTGCC TTTAAGAGAT GCTGTAGAAA GTGTTGAGAA GCAGCTATTG GAAAGAGCCT ATGCTAAGTA TCGAACTACC AGACAGATGG CTAAGGAATT AAAAGTTGAT GCCTCTACTG TTGTCAGAAA AGCGGCAAAA TATTGTATTT TTAGAGATTC TGTACTTACT AGCTTGCTTG CGGAAAACCA AATTGGAAAC TAA
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Protein sequence | MKVREIMTPD PLTISPSHKV CEVVNIFIEN KIDGAPVLEN GKLVGLFTKS HIYRAISKGI DMNTKVEALM TREILTGYPD DEFGDVVNAT VPRLPVVDEK GRVVGIITRG DIAKAFFNSY RNISLELDTI MNSTHNAIVS VDEKGIIKVW NLSAARLLGI EAEAATGKNI LDVLSTSNLM DVIETGKVET LKKVKLNDRY FISNRSPIKK DGKIIGAVAV LQDISELDKM SKELCYVKEL NEELDAIVES SFDGLFITDG KGIILRYNKA FELLTGIDAH EYLGLSVEDI RRDGIISEPV TCHVLEEKKS ITIMQTSKTG KLTLTTGNPV IDANGEIIRV VCNVRDITEL NLLKHKLKKA QGLSQHYENQ LRTLKLRYDN SENLVVTSAK MRNLLDMVVR LASVDSTVLI TGESGTGKEL IAEIIHSNSS RRDKPFIKVN CGAIPENLLE SELFGYDGGA FTGAKKEGKS GYIELASGGT LFLDEIGEMP LNLQVKMLRF LQNKEIIRVG GTNYINVDVR IVTATNRNLL EMVQQKQFRE DLYYRLNVVP VHIPPLRDRK DDIPPLAAHF IEVFNHKYKK NKKISPGVVD ILMQYDWPGN IRELENLIER MVVTTMDDII TSEDLPSYLR DKVGISSSYI IVSGIVPLRD AVESVEKQLL ERAYAKYRTT RQMAKELKVD ASTVVRKAAK YCIFRDSVLT SLLAENQIGN
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