| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_1238 |
|---|
| Symbol | |
|---|
| ID | 8428177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum acetoxidans DSM 771 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013216 |
|---|
| Strand | - |
|---|
| Start bp | 1255390 |
|---|
| End bp | 1255929 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 645033571 |
|---|
| Product | Peptidoglycan-binding LysM |
|---|
| Protein accession | YP_003190745 |
|---|
| Protein GI | 258514523 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3858] Predicted glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000457742 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATGATA CAACATTAAA TCACCAGTTA CCGCCTTGCA CCGGCGGAAC GGTATATACT
ATCCGCCCGG GAGACTCCTT GCTAAGTCTG GCCAGCCGTT TTAATACTAC AGTAGAAGCT
ATCACTAATG CTAATCCAGG CATCGTTCCT ACTAACCTAC AAATTGGTCA GCAAATCTGT
ATTCCCGTAA AACCGGTTCC CGGAAAATGT CAGGGCGGTT TTCTCTACAG CATCAAACCT
GGGGATACCT TTTATAATCT TGCAAATCGT TTTGGAATTG CTGTAGACTC TTTAATCGCA
GCCAATCCAG GAGTAGATTT CAATAAACTG GCAGTCGGCC AGGAAATATG CATTCCTTCC
ACTCCTCCAA CCCCGACAAA ATGCCCGAGT GGAACATTTG CCTACACCAT ACAAAGCGGT
GATACTTACT TCCGCCTGGC CAAACGATTT AATACAACTG TCAGAGCTAT CAGAGAAGCC
AATCCAACGG TAGATCAGAA CAATCTTCAA ACAGGACAGA GCATCTGCAT TCCCAGGTAA
|
|---|
| Protein sequence | MNDTTLNHQL PPCTGGTVYT IRPGDSLLSL ASRFNTTVEA ITNANPGIVP TNLQIGQQIC
IPVKPVPGKC QGGFLYSIKP GDTFYNLANR FGIAVDSLIA ANPGVDFNKL AVGQEICIPS
TPPTPTKCPS GTFAYTIQSG DTYFRLAKRF NTTVRAIREA NPTVDQNNLQ TGQSICIPR
|
|---|
| |