Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtox_1123 |
Symbol | secD |
ID | 8428062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum acetoxidans DSM 771 |
Kingdom | Bacteria |
Replicon accession | NC_013216 |
Strand | + |
Start bp | 1151832 |
End bp | 1153082 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 645033458 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_003190632 |
Protein GI | 258514410 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000301062 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTGGA AAAGTATATC TAAACTGGCA GTTATAGTTT TGCTGGTTGC TGCCGTGTCG GTAGTTTTTT TTAAGCCTAA TCTTAAGCCT GTTTACAATA AGGAAATCTC CTGGATGCCG CTGGTCAAGA TAATTAATTT GGGTCTTGAT CTAAGAGGTG GTGTGCATGT TGTTTTACAA GCCGAGGAGA CTCCTGGTGT ATCGTTGACG GATGACGAAA TCAAGAAGGC TATGGCTGTT ATTAGCAACC GGGTAAACCA GTATGGTGTG GCGGAGCCGA TTATTCAGCA GCAGGGCAAA GACCGAGTCA TTGTCGAGTT AGCCGGGATA AAGGATCCCG ATGAAGCAGT CAACAATATG GTAAAGACTG CCTACCTGGA ATTTAAAGCT GAAAACGGTC AAACCGTACT TACTGGGCGT GATTTAAAAG ACGCTGAAGA ATCAAAGGCT CCTGACTCCT CAGCGGCGCA AGTAAACCTG ACTTTTACTC CCGCCGGGGC AAAAACTTTT GGAGATTTTA CAGCTAGGAA TGTCGGTAGA AATTTGGGTA TATACTTGGA CGGCAAGCTG ATTCAAAATC CTTCCATTGA AACACCGATT CAAAATGGAC AGGCCCGTAT TACCGGTTAT GCTACTCTGC AAGATGCTCA TAATATAGCA ATTTTGCTTC GTTCCGGTGC TTTGCCGGTA AAAATGGATG TTATTGAAAA ACGTGCGGTA GGCCCGATGC TGGGCGCTGA CTCTCTGGCC AAGTCTAAAA TGGCCGGAAT AGTAGGTTTT GCTGCTATTT TAATTTTTAT GATTGGGTAT TACCGTTTGC CGGGTTTGAT TGCCGATATT GCTCTGGTTA TTTACTCACT GATTGTATTG GCGGTTTTCG CCGGATTGCA TGTTACCATG ACGCTTCCCG GTATAGCCGG TTTTCTGCTA TCGCTGGGTA TAGCGGTAGA TGCCAATGTT ATTATCTTTG AGAGAATTAA AGAAGAACTG CGAAATGGCA AGACACTGCG CACAGCTATT GATGCTGGAT TTAAAAGGGC TGTTGTCACT GTTGTGGATG CTAACGTAAC AACCCTGATT GCCGCCGCCG TGTTGTATTA TTTTGGTACC GGCCCTATTA AGGGTTTTGC TGTGACCTTG AGTGTCGGTA TCCTGGCCAG TATGTTTACC GCTATCAGTT TGACCAGGTA TATGCTGCAG CTAACCGCAA GCAGTAATTT GGTAAAGAAT ACTAAAATGT ACGGGGCGTA A
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Protein sequence | MNWKSISKLA VIVLLVAAVS VVFFKPNLKP VYNKEISWMP LVKIINLGLD LRGGVHVVLQ AEETPGVSLT DDEIKKAMAV ISNRVNQYGV AEPIIQQQGK DRVIVELAGI KDPDEAVNNM VKTAYLEFKA ENGQTVLTGR DLKDAEESKA PDSSAAQVNL TFTPAGAKTF GDFTARNVGR NLGIYLDGKL IQNPSIETPI QNGQARITGY ATLQDAHNIA ILLRSGALPV KMDVIEKRAV GPMLGADSLA KSKMAGIVGF AAILIFMIGY YRLPGLIADI ALVIYSLIVL AVFAGLHVTM TLPGIAGFLL SLGIAVDANV IIFERIKEEL RNGKTLRTAI DAGFKRAVVT VVDANVTTLI AAAVLYYFGT GPIKGFAVTL SVGILASMFT AISLTRYMLQ LTASSNLVKN TKMYGA
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