Gene Dtox_0047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtox_0047 
Symbol 
ID8426969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum acetoxidans DSM 771 
KingdomBacteria 
Replicon accessionNC_013216 
Strand
Start bp49431 
End bp51647 
Gene Length2217 bp 
Protein Length738 aa 
Translation table11 
GC content37% 
IMG OID645032442 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_003189633 
Protein GI258513411 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00846465 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGATCC TTAGTTTCAA AATACCTTTT AAACATATTG CTATTTTCCT TTTATTTATT 
CAGGGTATTA TATTGATCGG TTATCTATAC TTCAATAATC AGCAATTTAA TATAAAAACA
GCTATTATTT TCTTATCAGT TGCTTCTTCT TGGCCCATAA TTTACCATTA CTTATATGAG
AAGGATTATA AATCATATTT ATTATCAATA CAAAACAGAT ATTTAACAAA ATATGCAAAT
GATATAGTTT TTTTACTTGA CAGTAATTTT AACTTTATAG AGATCAATGA TAAAGCAATA
AAAACGTATG GTTATTCTCA TGAGGAATTT TTTAAAATGA AATTTTATAA CCTGTGCGAC
CAAGAAAAAT ATTCGGAAGA CGATGAAGTT TATACAAAAA TTGATTCACA TGATGGCTAT
ATTTATGAAA CTATACACAA GAAAAAAGAT GGAAGCACTT TCCCTGTAGA AATAAGTTCG
CGTACGATTA TTGCCGGAGG GAAAAAACAC TATCATTCAA TTATCCGCAA TATAACCGAA
CGTAAAAAAA CAGAAGCAAT TCTGAGAAGA TATCAACTGC TATCAGAAAA TACCCGGGAC
ATTATTCTAT TCGTTCGCAG TGACGGGCAA ATTATTGACG CAAACTTAGC AGCTCTGCAG
GCTTACGGCT ATAATAGTGA AGATATTCTC ACGCTAAATA TTCAGAATAT TAGAGAGAAG
GCAACCCGAA CGTTAATAAA TTACCAATTG CGGGAGGCCG TAGATAAAGG AATCGTGTTT
GAAACAATAC ACCAGCGTAA AGACGGCAGC ACTTTCCCGG TGGAAGTCAG TTCAAAAGGC
GCATTGCTTG AGGGAGAACA GATAGTAGTA AGTATCATCC GCGATATAAG CGAGCGCAAA
AAGTTTGAAC TGCAAATTAA ACACCTGGCC ACACATGATT ACCTGACAAA CATACCAAAC
AGGTACTACC TGGAGGAATC ATTAAAGCGC TACGTGGCCA AAGCAAAACG CGGAACAACC
AGCGCATTAC TGCTATTGGA TCTGGACAAC TTTAAACTGG TAAACGACAC CAAAGGACAT
GTGGCAGGCG ATGAGTTATT AATCATATTT ACAAAAATAC TAAAAGCCAA TTTACGTGAA
GAGGATCTGT TGACCAGGCT GGGAGGAGAT GAATTCGCTG TACTTCTGGA AGGAATAAGT
ATAAATGAAG CAACGGAAAT CGCAGAAAAA TTGCGGGCTG TAATTGACAA CCAAACAATT
GCCTTGAGTC TGATTAATGT AAGGTTTAAC CTTACTGTAA GTATCGGTTT ATCAATGGTG
GACGGAAGCA TGGATCCGAT CCAAATATTA TCACAGGCTG ACAGAGCTTT GTATATTGCT
AAGGAAAGTG GGCGCAACCG GGTAATCACC ATTAAGGGTG TTGAAGATAC AGAGGAAAAA
CTAACCATGA CTAACCAGTT AATAAGTTTA ATAAAAAAAG CATTAAGAGA TAACCTGTTT
GAAATTGTCT TCCAACCAAT AGTAAAAGTT GCCCATAGGG ATATCATTCA CTTTGAAGCA
CTGCTCAGGC TGAAGGATGA CCACGGCCAT TTGATTTCTC CGGGACATTT TATTCCGGTG
GCTGAACGTT TCGGCATGAT GGCCCAGATT GACTTGTGGG TACTTCAGTC AGTTATTGAT
ACTCTGCGCA TGCATGAAGG AATAAGCATA TTTATTAACA TCTCGGGCAC CAGTTTAAGC
AACGAGCGCC TGCTGAATCA ATTTGAAAGC ATCGTTCTGA ACAGCAGCGT GGAACCTTCG
CGACTGGGTT TTGAAATTAC AGAAACCGCC GCAGCCAGAG ATATGATTAA GGCTGAACAA
TGGATCCGCA AATTAAAAAG ACTGGGTTGT AAATTCGCCA TAGACGACTT TGGCATAGGT
TTTTCATCTT TTTCTTATCT GCGCCTGCTG CCAGTGGATT ACTTAAAGAT AGACGGATCC
TTTATATACA ATATTGATCA AGAAACGACA AACCTTGCAT TGGTTAAAGC TATGAATACT
GTTGCACACA CTTTAGATAA GAAAACCATA GCTGAGTTTG TTGAAAACGA AAATATTTTA
CAAATTCTAA ATGAGCTTGA CGTTGACTAT GCGCAGGGAT ATTTTATCGG CATACCTGCG
CAAATTGAAC AGTATGTGAT GAATAAAAAT AATGAAAAAC AAGAGCATCT GGATTAA
 
Protein sequence
MMILSFKIPF KHIAIFLLFI QGIILIGYLY FNNQQFNIKT AIIFLSVASS WPIIYHYLYE 
KDYKSYLLSI QNRYLTKYAN DIVFLLDSNF NFIEINDKAI KTYGYSHEEF FKMKFYNLCD
QEKYSEDDEV YTKIDSHDGY IYETIHKKKD GSTFPVEISS RTIIAGGKKH YHSIIRNITE
RKKTEAILRR YQLLSENTRD IILFVRSDGQ IIDANLAALQ AYGYNSEDIL TLNIQNIREK
ATRTLINYQL REAVDKGIVF ETIHQRKDGS TFPVEVSSKG ALLEGEQIVV SIIRDISERK
KFELQIKHLA THDYLTNIPN RYYLEESLKR YVAKAKRGTT SALLLLDLDN FKLVNDTKGH
VAGDELLIIF TKILKANLRE EDLLTRLGGD EFAVLLEGIS INEATEIAEK LRAVIDNQTI
ALSLINVRFN LTVSIGLSMV DGSMDPIQIL SQADRALYIA KESGRNRVIT IKGVEDTEEK
LTMTNQLISL IKKALRDNLF EIVFQPIVKV AHRDIIHFEA LLRLKDDHGH LISPGHFIPV
AERFGMMAQI DLWVLQSVID TLRMHEGISI FINISGTSLS NERLLNQFES IVLNSSVEPS
RLGFEITETA AARDMIKAEQ WIRKLKRLGC KFAIDDFGIG FSSFSYLRLL PVDYLKIDGS
FIYNIDQETT NLALVKAMNT VAHTLDKKTI AEFVENENIL QILNELDVDY AQGYFIGIPA
QIEQYVMNKN NEKQEHLD