Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_4205 |
Symbol | |
ID | 5714706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009959 |
Strand | + |
Start bp | 52196 |
End bp | 53524 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641277100 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | YP_001542396 |
Protein GI | 159046728 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACCC TCGCGTTCGG TTTCGTCCTG ATCGGGGTGC TGGTCGGCCT CGTGCTGATG GGCATGCACA TCGCCATCGC CCTCTTCGGC GTCGCCTTCG TCGGCATCTG GCTGATCCGG GACAATATCG ACCTGGCCTT CCGCATGCTC GAGCTGACCG CCTATTCCGG CATCGCCGAC TACCTCTTTG CCACCATCCC GCTTTTCGTG CTGATGGGGC TGCTGGTCAG TGTCTCCAAC GTGGGCCGCG ACACGTTCCA GGTCGCCGAG GAACTGCTGC GCCGGATGAT CTGCGGGCTT GGCGTGGCCA CCGTTGCGGC CAACACGATC TTCGCCGCCG TCACCGGGGT CTCCATCGCC TCGGCCGCGG TCTTCACCCG CGTCGCCGTG CCGGAGATGA CCCGCCACGG CTACCGCCCG GCCTTCTCGG CGGGCACGGT CGCGGGGTCC TCGGTGCTTG GCATGCTGAT CCCGCCCAGC CTCCTGCTGA TCATCTACGG CATCCTGGCC GAGGTCTCCA TCGGCGGGAT GTTCCTCGCG GGCATCCTGC CGGGCCTGAT GCTCGCGGGC GGCTTCGTGG TGATGCTGAT CGGGCTGACC CTCGCCTTCC CCCGCTTCGT GCTCGCCGAC CCCGATGCGG TGAAGGCGCG CAAGCGCGAC ACCGACCTGA CCCCCATGCC CGCGCGCGAG ATGATCGCCA AGCTGACGCC CATCGTCCTG CTGGTCATCC TGGTGCTGGG CGGTCTCTAC ACAGGGTTTT TCACCCCCAC CGAGGCCGGC GGCATCGGCG CATTCGGGGC CCTGATCGTG GCCTTGTCGC GCCGCAGCCT CGACCGCCAC AAGCTCTGGC AGGTGATGAA ACAGACCGGC GTGATCTCCG TCTCGATCCT GCTTCTGCTG GTCGCGGCCT CGTTCTATTC CCGCATGCTC GCCATCGCGG GCCTGCCCAA CGCGATCACC GGCCTCGTCA CCGACAGCGG CTTCGGCCCC CTGGGCTTTC TGTTCTTCTA CGCGGTGATC ATCCTTCTAA TGGGCATGAT CCTCGACAGC ACCTCGATCC TGCTGATCAT GGTCCCCATC GCCGCCCCCA TCGCGCAAGG CATGGGCATC GACCTGATGC ATTTCGGCAT CGTCACCGTG CTGGCGGTCG AGATCGGGCT GCTCACGCCG CCCTTCGGCA TCTCCGTCTT CACGGTCCAC AACACGCTCA ACGACCCCGA TGTCTCGGTG GAGAGTATAT TCGCCGCCAC CCTGCCCTTT ATCGCGGTGA TGCTGCTGGT GCTCGTGATC GTCGCCCTCG TGCCCACCAC CGCCACCCTG TTCCTCTAG
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Protein sequence | MTTLAFGFVL IGVLVGLVLM GMHIAIALFG VAFVGIWLIR DNIDLAFRML ELTAYSGIAD YLFATIPLFV LMGLLVSVSN VGRDTFQVAE ELLRRMICGL GVATVAANTI FAAVTGVSIA SAAVFTRVAV PEMTRHGYRP AFSAGTVAGS SVLGMLIPPS LLLIIYGILA EVSIGGMFLA GILPGLMLAG GFVVMLIGLT LAFPRFVLAD PDAVKARKRD TDLTPMPARE MIAKLTPIVL LVILVLGGLY TGFFTPTEAG GIGAFGALIV ALSRRSLDRH KLWQVMKQTG VISVSILLLL VAASFYSRML AIAGLPNAIT GLVTDSGFGP LGFLFFYAVI ILLMGMILDS TSILLIMVPI AAPIAQGMGI DLMHFGIVTV LAVEIGLLTP PFGISVFTVH NTLNDPDVSV ESIFAATLPF IAVMLLVLVI VALVPTTATL FL
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