| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4156 |
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| Symbol | |
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| ID | 5714726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009959 |
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| Strand | + |
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| Start bp | 1936 |
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| End bp | 3684 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641277051 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001542347 |
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| Protein GI | 159046679 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.850412 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGGACC TTGCCCATGT GACGGAGATC GACCGGGTTG TCAGCGGCCG CGCGCAGGGG
TCGCTGCGCG ATGCGGTGGT CACCGAAAGC TGGCGGCGCT GCGTCGAGTC CTACGGGTTG
AACCCGACCG CCACCGACGC CCCCCATATC GTCACCGACG CGGAGTTGCG TGCCCATCGC
GAGCAGGCCG AGCGGCTGAT CGCCGTGGCC CGGTCCGGGC TTCAGGGGCT GTTCAAGCAG
GTGGCGGGGC ATAACTACGT GCTGCTTCTG GCCGATGCGC AGGGGGTGTG CGTCGATTTC
TTCGGCGATC CGCGTTTCGA GGACGAGCTG CGGAGCGCCG GTCTCTATCT CGGGTCGAAC
TGGCAGGAGG AGCTGGCGGG CACCTGCGGC GTCGGGTCGT GCATTGTCAC CGGGGAGGCG
GTGACGATCC ACCAGGACGA CCATTTCGGC CTCGCCCACA CCCCGCTGAG CTGTACCGCA
GCACCCATCT ACGACTCGCT GGGGCAGCTG TCGGCGGTTC TCGACATCTC GCTGCTGCGT
TCGCCCACCC CGAAATCGAG CCAGAACCTG GCCATGAGCC TGGTCAAGGC CTCGGCCCGG
CGGGTGGAGA TGGCCAACCT GATGGCCACG GCGCGGCAGG ACTGGGTGCT GCGATTCTCG
ACCTCGCCGG AATTCCTGGA GGTCGATCCG GAGGCGGCGG TGAGCCTCGA TGGCGCGGGG
CGGATCACCG GGCTGACCCA TGCCGCGCAG GCAGCACTCG GGGCGACGGA TCCGGGCGCA
CTGCTGGGCA CGCGGATCGA CGCGCTGATG GAGATGTCGA TCGACGATCT TCCGGACCTG
ATGCGCGGGC GGCCCACGGA GGAGCGGGTG CTGCGCCTGC GTGACGGGCG CGGGGTGTTC
GGCCATGCCA TCGCCCCGCA AGCCCCCCGG ACCCCCCGCC CGGCGGCGGT GCCCGAGATG
CCCGCGCCGC TGGCGGGGTT CGCCGGGCCG GATCCGGTGC TGACCCCGCT GCTGCGGCGG
TTGGGGCAAT TGGCGGGCAC CGAGGTGCCG CTGCTGCTGC TGGGCGAGAC CGGCACCGGG
AAGGAGCGGC TGGCCCGCGC CGTGCATCTG AGCGGGCCCG CGGGGCGGGG TTTCACGGTG
CTGCGCTGCG CCGGTCTGGG GCGCGATCCG CTGCCCGAGC CCCCGGCGGG GACCCTGTTT
CTGCGCGGGG TCGAGGATCT GGACACCGCG GGGCAGGGGG CGGTTCTGGC CCTGCTGGAG
GCGCGCCCCG ACCTGCGCGC GATCGCCTCG GCGCGCACGG ACATCTCGGC GGCGGTGAAG
GCCGGGGCGT TCCGGTCGGA CCTGTTCTTC CGCCTGGCGG GGCATGTGGC GCATCTGCCG
CCCCTGCGGC TGCGGCACGA TCTGGAGTGG CTGCTGACGC GGTTGATGCG GCGCCATGTG
GCGCGGGATC TCAGCCTGTC GCCCGCGGCG CGGGCCGAGC TGTCGGCGCG CAACTGGCCG
GGCAATATCC GCGAGCTGCA ATCCACGCTC GACGTGGCCG CGGCCCTTGC GGAGGGTCGG
GTGATCGACC TGCCGGACCT GCCCGGCCCC AGCCTGCCGG AGGCCGCCGC CGCCCCGCCC
GAGGCCGATT TGCAGAGCCT GCTCGATGCC TGCGGCTGGA ACATGAGCCA GGCCGCAAGG
CGGCTGGGAG TGAACCGGTC CACCGTGTTG CGGCGGGTGC GCAAGGCCGG GCTGACCCCG
CCGTCCTGA
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| Protein sequence | MGDLAHVTEI DRVVSGRAQG SLRDAVVTES WRRCVESYGL NPTATDAPHI VTDAELRAHR
EQAERLIAVA RSGLQGLFKQ VAGHNYVLLL ADAQGVCVDF FGDPRFEDEL RSAGLYLGSN
WQEELAGTCG VGSCIVTGEA VTIHQDDHFG LAHTPLSCTA APIYDSLGQL SAVLDISLLR
SPTPKSSQNL AMSLVKASAR RVEMANLMAT ARQDWVLRFS TSPEFLEVDP EAAVSLDGAG
RITGLTHAAQ AALGATDPGA LLGTRIDALM EMSIDDLPDL MRGRPTEERV LRLRDGRGVF
GHAIAPQAPR TPRPAAVPEM PAPLAGFAGP DPVLTPLLRR LGQLAGTEVP LLLLGETGTG
KERLARAVHL SGPAGRGFTV LRCAGLGRDP LPEPPAGTLF LRGVEDLDTA GQGAVLALLE
ARPDLRAIAS ARTDISAAVK AGAFRSDLFF RLAGHVAHLP PLRLRHDLEW LLTRLMRRHV
ARDLSLSPAA RAELSARNWP GNIRELQSTL DVAAALAEGR VIDLPDLPGP SLPEAAAAPP
EADLQSLLDA CGWNMSQAAR RLGVNRSTVL RRVRKAGLTP PS
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