| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3899 |
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| Symbol | |
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| ID | 5714428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 123407 |
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| End bp | 124261 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641276812 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001542108 |
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| Protein GI | 159046437 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.190456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGC ACACCGACAT TCCCGCACAA TCGCAAGACG CGATGCCTGC CCATGAATAC
AAGATGGATC CGCCCCCCGA CTACATGCCG CGCCACCCCG GCGTCGGCAA GCTCGAGGGC
AAACGCGCCA TTATTACCGG CGGCGACAGC GGCATCGGAC GGGACGTTTC GGTCCTCTTC
GCGCGTGAAG GCGCCGAGGT CGGAATCATC TACCTCGATG AGGACCGCGA CGCAAAAGAG
ACCGTCCGCC TGATCGAGAA CGAAGGAGCC ACGGGCCACG CCGTGCAGGC TGATATCGGC
GACCGCGCAC AGGCTTTCGA TGCTGTCCGA GAGCTGGCCG AAAAGATGGG CGGCATCGAC
ATTCTCGTGA ACAATGCTGC CCAGCAATGG CTGGAGACCG AACTCGATGA CATTACCGAG
GATCATCTGC GCCGGACTTT CGACAGCAAC GTCATGGGGT ATTTCTTTTG CACCCAGGCG
GCGGCGGACC ACCTGCCCGA GGGCGGCACC ATTATCAACA CCGCCAGCGT CAACGCCTTC
AAGGGCAACG CCGCGTTGAT CAGCTATTCG TCCACCCGCG GCGCGATCAC GGCCTTCAGT
CGCTCCATCG CATCGCAATT GGTGAGCAAG GGCATCCGGG TCAACTGCGT GGCGCCTGGC
CCGATCTGGA CGCCATTCAT CCCCGGCACC ATGCCGGCCG AAAAGGTCGA AGGTTTCGGC
TCGCAAGTAC CCATGCAGAG ACCGGGACAG CCTTGGGAGG TCGCGACCTC CTACCTGTTT
CTCGCCAGCA GTGACGGGTC GTATTTCACG GGCCAGACCC TGCACCCCAA CGGCGGCATG
ATCGTGGGCA GTTGA
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| Protein sequence | MSKHTDIPAQ SQDAMPAHEY KMDPPPDYMP RHPGVGKLEG KRAIITGGDS GIGRDVSVLF
AREGAEVGII YLDEDRDAKE TVRLIENEGA TGHAVQADIG DRAQAFDAVR ELAEKMGGID
ILVNNAAQQW LETELDDITE DHLRRTFDSN VMGYFFCTQA AADHLPEGGT IINTASVNAF
KGNAALISYS STRGAITAFS RSIASQLVSK GIRVNCVAPG PIWTPFIPGT MPAEKVEGFG
SQVPMQRPGQ PWEVATSYLF LASSDGSYFT GQTLHPNGGM IVGS
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