| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3858 |
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| Symbol | |
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| ID | 5714387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | + |
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| Start bp | 66007 |
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| End bp | 68247 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641276771 |
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| Product | protein of unknown function DUF940 membrane lipoprotein putative |
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| Protein accession | YP_001542067 |
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| Protein GI | 159046396 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00089637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGCGG GTCGTTTCGC GGCGAAATAC CGCCTGGCGC GGGGCGGTCT GCTGGCGCTG
TTGCTGTCGG TCTCCGCCGC GGCGCTGCAG GCCCAGAGCA CCGAGCAGCT GCTTGCGGTG
CAGGGCCCGT CCGAGCGCGG GGCCAGCGCC GCCGCTGCCG GGCCCGAGGG CGCGTTCCGC
CCCAGCCCCG AGACCATCTT TCGCCAGCCG AGCCTGAACT TCTACGGGGT GCCGGGGTTG
ATCGACCTGC CCTCCGGCGA GGCCATGCCC GACGGCCAGC TCGCGGTGGG CGTGTCGACC
TTCGGCGGCA CCACCCGGAC CACGCTCAGC TTCCAGCTCA CCCCGCGCAT CTCGGGCAGT
TTCCGCTATT CGGCGATCCG CGACTGGGAC AGCGACGGGT TCGATACCTA TTACGATCGC
AGCTTCGATC TGCGCTTTCT GGCCCTTGAA GAGAGCCGCT TTCTGCCCTC GGTGACCATC
GGGTTGCAGG ATTTCGCGGG CACCGGGATT TATGCCGGGG AATACATCGC CGCCACCAAG
ACTTTTGCCG GGGGCCTCAA GGGCACGGTG GGCCTCGGCT GGGGCCGGTT CGGCAGCGCG
AGCTCCTTCG GCGGGCTGAT TTCCGACGAG CGGCCGGCCT TCGATCCCAA CGATACCGGC
GGGGAGCCGA GCACCGACCA GTGGTTTCGC GGCCCGCAAT CGGTCTTTGC CGGGATCGAG
TGGCAGCCCA CGGACCGGCT GGGTCTGAAG CTGGAATATT CCACCGATGC CTATGAGGCC
GAGACCGTCG ACCGCGACGT GTTCGAGCGC GAGTCGGACT GGAATTTCGG GCTGGAATAC
CAGGTCAGCG AGGACTGGCG GCTGGGGGGG TATTACCTCT ATGGGGCCGA GTTGGGCGTG
ATGGCGCAAT TCCAGCTCAA CCCGCGGCGC CCGGCGGTGC CGATGCGGGT GGCGGCCCCC
GACCCGGTGG ACCCGCGCCC GGACCGGGCG GCCAACCCGA CCCTCTGGTC GGCGGACTGG
ATCACCATCC CCGGCGCGCA GGAGACCCTG CGCGACGCCC TGGAAGCGCC GCTCGCCGCG
GAAGGGATCG AGTTGCAGGC GCTGGCGGCC ACGGGCACCA GCATCGACCT GCGCTATCGC
AACGCGCGCT ACCTGTCCTC GGCCAACGCG GTGGGGCGGG TGGCGCGGGT GCTGGCCCGG
GTGCTGCCGC CCTCGATCGA GACCTTCCAC CTGACCCCGG AGGTGTCGGG CATGCCGGCG
AGCCGGATCA CCCTGCGCCG GACGGCGCTG GAGGAGCTGG AATTCACGCC CCAGGCCGGG
GCGCGGCTGC TGGCGCAGAG CGAGATTTCC GAAGCGCCCC CGCTGCCGGA GACGGCGGTG
GCCTCCGAGA CGGTCGCGCC GCGCTTCTCC TGGTCCCTGG GGCCCTACCT GGAGCAGAGC
TTCTTCGATC CGGACGAGCC CTGGCGGTTC GAGATCGGGC TGGATGCCAG CGCGTCCTAT
CAGATCACGC CGAACCTGAG CCTGTCGGGG TCGATCACCA AGGAAATCGT CGGCACCATC
GCCGACAGCA CGCGCGTGTC CAACAGCCAG TTGCCCCCGG TCCGTTCGAA CGGGGTGCTC
TATGCGCGGG AGGGCGATCC GGGGCTCGAC AACCTGGTGC TGGCCTATAC GTTCCGCCCC
GGTCAGGATC TTTATGGGCG GGTCAGCGCG GGCTACCTGG AATCCATGTT CGGCGGGGTC
TCGGCGGAGC TGCTGTGGAA ACCCGTGGAC AGCCGCCTGG CCCTGGGGGT GGAGCTGAAC
TATGCCCGCC AGCGGGATTT CGACCAGCGC CTCGGCTTCC AGGATTATGA CGTGATCACC
GGGCATGCCT CGGCCTATTA CGCGTTCGGG GATGGCTACC TGGGGCAGGT GGATGTGGGC
CAGTACCTGG CGGGCGACAA GGGCGCGACC TTCACCCTGT CGCGGGAATT CGGCAATGGC
TGGAAGCTGG GCGGGTTCTT CACGCTGACC GATGTCTCGG CCGAGGAATT CGGCGAGGGG
TCGTTCGACA AGGGGATCAT GCTGACGATC CCGGCGGGCT GGATCCTGGG CCAGCCGAAC
CGCACCGCCC TGTCGACCAC GATCCGGCCC CTGCAGCGCG ACGGCGGCCA GCGGCTGGAG
GTGCCGGGGC GGCTTTACGA CCCGGTCCGC GCGCAACATG CCCGCGCCCT GACGCGGCAA
TGGGAACGGG TATGGCAATG A
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| Protein sequence | MRAGRFAAKY RLARGGLLAL LLSVSAAALQ AQSTEQLLAV QGPSERGASA AAAGPEGAFR
PSPETIFRQP SLNFYGVPGL IDLPSGEAMP DGQLAVGVST FGGTTRTTLS FQLTPRISGS
FRYSAIRDWD SDGFDTYYDR SFDLRFLALE ESRFLPSVTI GLQDFAGTGI YAGEYIAATK
TFAGGLKGTV GLGWGRFGSA SSFGGLISDE RPAFDPNDTG GEPSTDQWFR GPQSVFAGIE
WQPTDRLGLK LEYSTDAYEA ETVDRDVFER ESDWNFGLEY QVSEDWRLGG YYLYGAELGV
MAQFQLNPRR PAVPMRVAAP DPVDPRPDRA ANPTLWSADW ITIPGAQETL RDALEAPLAA
EGIELQALAA TGTSIDLRYR NARYLSSANA VGRVARVLAR VLPPSIETFH LTPEVSGMPA
SRITLRRTAL EELEFTPQAG ARLLAQSEIS EAPPLPETAV ASETVAPRFS WSLGPYLEQS
FFDPDEPWRF EIGLDASASY QITPNLSLSG SITKEIVGTI ADSTRVSNSQ LPPVRSNGVL
YAREGDPGLD NLVLAYTFRP GQDLYGRVSA GYLESMFGGV SAELLWKPVD SRLALGVELN
YARQRDFDQR LGFQDYDVIT GHASAYYAFG DGYLGQVDVG QYLAGDKGAT FTLSREFGNG
WKLGGFFTLT DVSAEEFGEG SFDKGIMLTI PAGWILGQPN RTALSTTIRP LQRDGGQRLE
VPGRLYDPVR AQHARALTRQ WERVWQ
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