| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3789 |
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| Symbol | |
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| ID | 5714318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 186794 |
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| End bp | 189304 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641276704 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_001542000 |
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| Protein GI | 159046328 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase
[COG2608] Copper chaperone |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0366996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.767636 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGAAC CCAAACAGAT CAGCCTGCCG ATCGAAGGCA TGTCATGCGC GTCCTGCGTT
GGCAGGGTCG ATCGCGCATT GAATGCAATC GACGGCGTAG AGGATGTGTC GGTGAACCTT
GCCTCGGAAA CTGCTCGCAT GAGCGTGGAC GCGCTCAAGC GCATTCCCGA CATCATCGAA
TCCCTTCGCG AGCTGGGCTA CCCCGCGCGG AAGGCCAGGG CCGAACTCAC GATTGCAGCG
ATGTCCTGTG CCTCTTGCGT CGGGCGGGTC GATAAGGCGC TTGCCGCGGT GCCCGGGGTG
GTCGAGGTGA ACGTCAACCT CGCCTCAGAG ACGGCGACGG TCGTTTACGT CGAAGGTCTT
GTCACGACAT CCGATCTGAT CGAATCAAGC GGCGCGGCAG GGTATCCAGC AACCGTGGCA
ACGGCCCAGG CCGGTGACGA CAGAGTTGCG CGCAAGGAGG AAGAGGCTCA GGCGCTTGCC
AAACGGGTCA CCTTTGCGGC CATCCTCGCC TTGCCGGTCT TCCTGATCGA AATGGGTGGC
CACGTCATTC CGGCCGTTCA TATGCTGATC GAGACCACGA TTGGCCAGCA GACGAGTTGG
CTTCTTCAGT TCGTGCTGAC GACAATCGTT CTCTTCGGCC CGGGCCGGAC GTTTTACACC
AAGGGTTTCC CGGCCTTGTT CCGGGGTGCC CCCGACATGA ACAGCCTCGT CGCGGTCGGC
ACCGGGGCGG CTTACCTTTA TTCCGTGGTT GCGACATTCG TACCGTCGGT CCTGCCTGAC
ACGCTGCGCA CCGTCTATTT CGAGGCGGCA GCGGTCATCG TCGTTCTGAT CCTTCTGGGG
CGGTTTCTTG AAGCGCGCGC CAAGGGGAGA ACGGGCGCGG CCATCCAGAA GCTATTAGGG
CTTCAGGCGC GGACTGCACG CGTGATGCGG GACGGAGAAA GCGTCGAGAT CGAGATCGAT
GCGCTGGTTC AGGGTGACAT CGTCATCGTG CGCCCTGGTG AACGCATCGC GGTCGATGGC
GAGGTCATCG AGGGGACCAG CCGCGTCGAC GAAAGCATGC TGACAGGCGA GCCGATCCCC
GCTGAAAAAG GTGCCGGAGA TACGGTGACC GGCGGGACGG TCAACGGCGC CGGAAGCCTG
CAGTTCCTCG CCACGCGGGT CGGCGCCGAC ACGACCCTGG CGCAGATTAT TCGCATCGTC
GAAGAGGCCC AGGGCGCCAA ACTGCCGATC CAGGGATTGG TCGACCGGAT CACCTTGTGG
TTCGTGCCTG CCGTGATGGC GATCGCGGCG GCGACCGTGC TGGTCTGGCT GTTTTTCGGG
CCTGATCCGG CCCTGACGAT GGCGCTGGTC GCCGGTGTGT CGGTGCTCAT CATCGCGTGC
CCCTGCGCGA TGGGGCTTGC GACGCCGACC TCGATCATGG TCGGGACGGG ACGTGCTGCG
GAAATGGGTG TCCTGTTCCG TAAAGGTGAC GCCTTGCAGC AACTTGATTC CGTTGATGTG
GTCGCCCTCG ACAAAACAGG CACGGTGACC GAGGGGCGAC CCGCACTGAC TGACCTTGTG
CTGGCGGAAG GGTTCGATCG CCCAACAACG CTCTCGAAGA TCGCTGCCGT GGAGTCGCTC
TCCGAGCATC CTGTCGCGGA CGCCATCGTG CGGGCCGCGC GGGCCGAGGG CGCACCTCTT
GTGGCGGCCG AAGGCTTTCA ATCGGTCACA GGTTACGGCG TGCGCGCCGT GGTCGAAGAC
GTGGAGGTGT TGGTTGGGGC CGACCGCTAC ATGGCGCGCG AAGGCATTGA CGTCTCGGCA
TTGGCTCCAG AGGAAACGAA GATCGCAAGC AAGGGTCGCA CGGCGCTTTA CGCTGCCATA
GATGGGCGTG TCGCCGCCGT GATCGGCGTG GCCGATCCGG TCAAACCGGC AAGCCGCGCA
GCCATCGCAG CGCTGCACGA AAAGGGTCTT GCGGTTGCGA TGATCACCGG CGACAAACGC
GAAACCGCCG AAGCCATCGC CCGCGAAACC GGTATCGACC ACGTCATCGC CGGCGTCCTG
CCGGACGGCA AGGTTGCGGC GCTCGACAGT TTGCGCCAAG GGAACAAGCG CATCGCCTTT
GTCGGCGACG GGATCAACGA CGCCCCGGCG CTGGCGCATG CCGATGTGGG CATCGCCATT
GGAACCGGCA CCGATGTGGC CATCGAATCT GCGGATGTCG TCCTGATGTC GGGCGATTTG
CGCGGCGTGG TGAACGCCTT CGAAGTATCG CGGCGGACCA TGCGCAACAT CCGGCAGAAC
CTGTTCTGGG CCTTTGCCTA CAACGTGGCA CTTATTCCGG TCGCTGCCGG GGTGCTTTAT
CCCGCCTTTG GGTTGCTCCT GTCACCAATC CTTGCGGCGG GTGCGATGGC GTTGTCCTCG
GTGTTTGTCC TGACCAATGC CCTGCGGCTG CGGCGCATCG CGCCTGCGAT GGACGAGCAG
CGCGCAATCC CGGCAGAGCT GGCAGCCGCC ACTCCTGCTC CAGCAGAATA A
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| Protein sequence | MPEPKQISLP IEGMSCASCV GRVDRALNAI DGVEDVSVNL ASETARMSVD ALKRIPDIIE
SLRELGYPAR KARAELTIAA MSCASCVGRV DKALAAVPGV VEVNVNLASE TATVVYVEGL
VTTSDLIESS GAAGYPATVA TAQAGDDRVA RKEEEAQALA KRVTFAAILA LPVFLIEMGG
HVIPAVHMLI ETTIGQQTSW LLQFVLTTIV LFGPGRTFYT KGFPALFRGA PDMNSLVAVG
TGAAYLYSVV ATFVPSVLPD TLRTVYFEAA AVIVVLILLG RFLEARAKGR TGAAIQKLLG
LQARTARVMR DGESVEIEID ALVQGDIVIV RPGERIAVDG EVIEGTSRVD ESMLTGEPIP
AEKGAGDTVT GGTVNGAGSL QFLATRVGAD TTLAQIIRIV EEAQGAKLPI QGLVDRITLW
FVPAVMAIAA ATVLVWLFFG PDPALTMALV AGVSVLIIAC PCAMGLATPT SIMVGTGRAA
EMGVLFRKGD ALQQLDSVDV VALDKTGTVT EGRPALTDLV LAEGFDRPTT LSKIAAVESL
SEHPVADAIV RAARAEGAPL VAAEGFQSVT GYGVRAVVED VEVLVGADRY MAREGIDVSA
LAPEETKIAS KGRTALYAAI DGRVAAVIGV ADPVKPASRA AIAALHEKGL AVAMITGDKR
ETAEAIARET GIDHVIAGVL PDGKVAALDS LRQGNKRIAF VGDGINDAPA LAHADVGIAI
GTGTDVAIES ADVVLMSGDL RGVVNAFEVS RRTMRNIRQN LFWAFAYNVA LIPVAAGVLY
PAFGLLLSPI LAAGAMALSS VFVLTNALRL RRIAPAMDEQ RAIPAELAAA TPAPAE
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