Gene Dshi_3606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3606 
Symbol 
ID5714136 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009955 
Strand
Start bp12199 
End bp12921 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content62% 
IMG OID641276524 
Productcytochrome c biogenesis protein transmembrane region 
Protein accessionYP_001541820 
Protein GI159046148 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0785] Cytochrome c biogenesis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.507935 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.590973 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCGCGCG CCCTCACCGC CGCCCTCCTA GCCGGCACGA TATCATTTCT GTCCCCCTGC 
GTGCTACCTC TTGTGCCAGG TTATGTCTCC TACGTAACCG GGCGCACAGC CGCTGAGGGC
GGGGTGGTCG GCGCTTCGCC GTCGCGCGCG GTCTGGCTGA GCCTGTGTTT TGTCCTCGGC
TTCTCCACCA TCTTCATGGG ACTTGGCGCA TCCGCGACTG CAATGGGTCA GGCCCTGCTT
CGGTGGCGGT ATGAACTCAA CCTCGTTGGG GGCGGCATCA TCATTTTCTT CGGGCTCTTC
ATGATAGGAG CCGCGCGTGT TTCGGTCATG GAACGCGACT TCCGATTCAA TCTCAACATC
CCCGGGGGCC AACCCGCTGC GTCCTATGTC CTCGGTCTTG CCTTCGGTTT CGGCTGGACT
CCGTGCATCG GCCCGATCCT CGGCGCGATC CTGACAGCCA GTGCGGCGAG TGCCACGATG
GGCGAAGGTA TCATGCTGCT TGCCGTCTAT TCCGCCGGCC TTGGAATACC GTTTCTGATC
GTGGCCGGAT TCACCGACCA GATCGCGGGA CGGTTGCGGG CCATCGGCCG GGTTGGCCGC
CGCCTCCACC AGCTTGCGGG CATAGTGATG ATCTTGATGG GGCTGGCGAT GATGACAGGG
CAGTTGAGCG CGCTGTCATA CTGGATGCTC GACGTATTTC CGGTTCTGGG ACGGATCGGA
TAG
 
Protein sequence
MARALTAALL AGTISFLSPC VLPLVPGYVS YVTGRTAAEG GVVGASPSRA VWLSLCFVLG 
FSTIFMGLGA SATAMGQALL RWRYELNLVG GGIIIFFGLF MIGAARVSVM ERDFRFNLNI
PGGQPAASYV LGLAFGFGWT PCIGPILGAI LTASAASATM GEGIMLLAVY SAGLGIPFLI
VAGFTDQIAG RLRAIGRVGR RLHQLAGIVM ILMGLAMMTG QLSALSYWML DVFPVLGRIG