Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3563 |
Symbol | infB |
ID | 5713794 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3748757 |
End bp | 3751255 |
Gene Length | 2499 bp |
Protein Length | 832 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641269492 |
Product | translation initiation factor IF-2 |
Protein accession | YP_001534897 |
Protein GI | 159046103 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00487] translation initiation factor IF-2 |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGATA CAGACGGCAA GAAAACACTC GGACTCCGTG GCGGGTCTCG GACGGGTCAG GTGAAGCAGA GCTTCAGCCA CGGCCGGACC AAGAACGTCG TGGTGGAAAC CAAGCGCAAG CGCGTTCTGG TGCCGAAGCC GGGTGCGTCC GCCTCGGGTG GTCGCGGGTC TGATCCCAAG AAACCCGGCA ATGCGACCGA TGCCGAGATG GAGCGCCGCC TGCGCGCCCT GCGGGCTGCG AAAGCCAACG AATCCGAAGA GGCGGAGCGC CGCGCGGCCG AGGAAAAGGC CCGCGAAGAA GAGCGCGCGC GCCGTCGGGC CGAGATCGAG GCGAAGGAAC GCGAAGAGCA GGAGCGCGAA GAGCGCGCCC GCCAGAAGGC CGAGGAAGAA GAAGAGGCCC GCAAGAAGGC GGAGGCCGAC GCGTCCTCCA AGCCCGCCGC GGCGCGCAGC AAGGCCGACG ATCCCGCGAC CATGGATCCC GCAGCCGCCC AGGCCGCCGA GGCCCGTGGT GCCGGCAAGA CCGGATCCGG ACCGCGAAAG GAGCGCACCG CCGACCGCGC CCAGCCCCGC AAGGAACAGA AGGGCAAGGG CGACGATCGC CGCCGGTCCG GCAAGCTGAC CCTGAACCAG GCGCTTTCGG GCGATGGCGG GCGTCAGAAG TCCATGGCTG CGATGAAGCG CAAGCAGGAA CGCGAACGCC GCAAGGCGAT GGGCGGCAGC CAGGAGCGCG AGAAGATCGT CCGCGACGTG CAGTTGCCGG AAACCATCGT GGTGCAGGAA CTTGCCAACC GGATGGCCGA ACGTGTGGCC GACGTGGTCA AGGCGCTGAT GAAGATGGGC ATGATGGTCA CGCAGAACCA GTCCATCGAC GCCGACACCG CCGAGTTGAT CATCGAGGAA TTCGGCCACA AGGTCGTCCG GGTTTCGGAC GCCGATGTGG AAGACGTGAT CGCGACGGTC GAGGACGACC CGGCCGACAT GCAGCCGCGT CCGCCGGTCA TCACCGTGAT GGGCCATGTC GACCACGGCA AGACCTCGCT TCTGGATGCG ATCCGCAACG CCAAGGTCGT GGCGGGCGAA GCCGGTGGGA TCACCCAGCA TATCGGGGCC TATCAGGTCA CGACCGATGA CGGCACCAAG CTGAGCTTCC TCGACACGCC GGGCCACGCG GCCTTCACGT CGATGCGGGC GCGCGGCGCG CAGGTCACCG ATATCGTTGT TCTGGTGGTG GCGGCCGATG ATGCCGTGAT GCCCCAGACC ATCGAGGCGA TCAATCACGC CAAGGCCGCG AAGGTCCCTA TGATCGTGGC GATCAACAAG ATCGACCGTC CGGAGGCCAA CCCGGACAAG GTGCGGACCG ACCTGCTGCA ACACGAGGTG ATCGTGGAGA AGCTGTCGGG CGACGTGCAG GATGTCGAGG TTTCGGCGAT CAATGGCACG GGTCTCGACC AGTTGCTGGA ATCGATCGCG CTGCAGGCGG AGATTCTGGA ACTCAAGGCG AACCCGGACC GGGCTGCCGA GGGTGCCGTG ATCGAAGCGC AGCTCGACGT GGGCCGCGGT CCGGTCGCGA CCGTGCTCGT TCAGAAGGGT ACCCTGCGCC GCGGTGACAT CTTCGTTGTG GGCGAGCAGT GGGGCAAGGT CCGCGCGCTG ATCAACGATC AGGGCGAGCG GGTCGACGAA GCCGGACCGT CGGTGCCGGT CGAGGTGCTG GGTCTGAACG GCACGCCCGA GGCGGGCGAC GTTCTGAACG TGGTCGAAAC CGAGGCCCAG GCCCGGGAGA TCGCCGAGTA CCGCGAGAGC GCCGCAAAAG AGAAGCGCGC CGCGGCCGGG GCGGCCACGA CGCTCGAACA GCTCATGGCG AAGGCCAAGT CCGACGAGAC TGTCGCCGAA CTGCCGATCG TTGTGAAAGC CGACGTGCAG GGCTCTGCCG AGGCCATCGT CCAGACGATG GAGAAGATCG GCAATGAAGA GGTGCGGGTG CGGGTGCTCC ATTCCGGGGT CGGGGCGATC ACCGAGAGCG ATATCGGCTT GGCCGAAGCC TCCGGCGCGC CGGTTTTCGG GTTCAACGTC CGGGCGAATG CGCCTGCGCG GAACGCTGCC CAGCAGAAGG GCGTGGAGAT CCGGTACTAC TCGATCATCT ACGACCTGGT GGATGACGTG AAGGCAGCGG CCAGCGGTCT TCTGTCTGCG GAGGTGCGCG AGAACTTCAT CGGCTATGCC GAGATCCGGG AGGTCTTCAA GGTCTCGGGC GTCGGCAAGG TCGCGGGCTG TCTCGTCACC GACGGTATTG CGCGCCGCTC TGCCGGGGTG CGTCTGCTGC GGGACAACGT GGTGATCCAC GAAGGCACGC TGAAGACGCT GAAGCGCTTC AAGGACGAGG TCAAGGAAGT GCAATCCGGC CAGGAATGCG GCATGGCGTT CGAGAACTAC GACGACATTC GCCCCGGCGA TGTCATCGAG ATCTTCGAGC GCGAAGAGGT CGAACGCAAC CTGGAGTGA
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Protein sequence | MSDTDGKKTL GLRGGSRTGQ VKQSFSHGRT KNVVVETKRK RVLVPKPGAS ASGGRGSDPK KPGNATDAEM ERRLRALRAA KANESEEAER RAAEEKAREE ERARRRAEIE AKEREEQERE ERARQKAEEE EEARKKAEAD ASSKPAAARS KADDPATMDP AAAQAAEARG AGKTGSGPRK ERTADRAQPR KEQKGKGDDR RRSGKLTLNQ ALSGDGGRQK SMAAMKRKQE RERRKAMGGS QEREKIVRDV QLPETIVVQE LANRMAERVA DVVKALMKMG MMVTQNQSID ADTAELIIEE FGHKVVRVSD ADVEDVIATV EDDPADMQPR PPVITVMGHV DHGKTSLLDA IRNAKVVAGE AGGITQHIGA YQVTTDDGTK LSFLDTPGHA AFTSMRARGA QVTDIVVLVV AADDAVMPQT IEAINHAKAA KVPMIVAINK IDRPEANPDK VRTDLLQHEV IVEKLSGDVQ DVEVSAINGT GLDQLLESIA LQAEILELKA NPDRAAEGAV IEAQLDVGRG PVATVLVQKG TLRRGDIFVV GEQWGKVRAL INDQGERVDE AGPSVPVEVL GLNGTPEAGD VLNVVETEAQ AREIAEYRES AAKEKRAAAG AATTLEQLMA KAKSDETVAE LPIVVKADVQ GSAEAIVQTM EKIGNEEVRV RVLHSGVGAI TESDIGLAEA SGAPVFGFNV RANAPARNAA QQKGVEIRYY SIIYDLVDDV KAAASGLLSA EVRENFIGYA EIREVFKVSG VGKVAGCLVT DGIARRSAGV RLLRDNVVIH EGTLKTLKRF KDEVKEVQSG QECGMAFENY DDIRPGDVIE IFEREEVERN LE
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