| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3556 |
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| Symbol | |
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| ID | 5713787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3739962 |
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| End bp | 3741758 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641269485 |
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| Product | sodium/solute symporter family protein |
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| Protein accession | YP_001534890 |
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| Protein GI | 159046096 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAGA CAACACTCAA CATTATCGTC GTGGGGCTGT CGTTCGCGCT CTACTTCGGT
ATCGCGATCT GGGCGCGCGC CGGATCGACT TCGGAGTTCT ATGCCGCCGG ACGCGGTGTC
AACCCGGTGG TCAACGGCAT GGCCACGGCG GCGGACTGGA TGTCCGCGGC ATCCTTCATC
TCCATGGCGG GCCTGATCGC CTTCGTGGGC TATTCCAACT CCAGCTTCCT GATGGGTTGG
ACCGGCGGGT ACGTGCTGAT GGCGCTGCTG CTGGCGCCTT ACCTGCGCAA GTTCGGCAAG
TTCACCGTGC CGGAATTCAT CGGGGACCGG TTCTACTCGA CCAAGGCACG CGTCGTCGGC
GTGATCTGCC TGATCGTCAT CTCGACCACC TACGTGATCG GCCAGATGAC CGGCGCAGGC
GTGGCCTTCT CGCGCTTTCT CGAAGTGAGC AGCACGACGG GCCTGGTCAC CGCGTCCTGC
GTGGTGTTCG TCTACGCGGT TCTCGGCGGC ATGAAGGGCA TCACCTACAC CCAGGTGGCG
CAATATGTCG TTCTGATCAT CGCCTACACG ATCCCGGCGA TCTTCATCTC GCTGCAGCTG
ACCGGCAACC CGATCCCGGG GCTCGGTCTG TTCTCGAACA TGGCGCCGGG CCAGGTCGGG
GCGGGCGAGC CGCTTCTGGT CACCCTGGAC GGCCTGCTGA CGGATCTCGG CTTCAACGCC
TACACCACGG GCAGCTCGCC CTTCCTGATG GCGCTGTTCA CCCTGTCGCT GATGATCGGG
ACCGCGGGTC TGCCGCACGT GATCATCCGC TTCTTCACCG TGCCGCGCGT GGCGGATGCC
CGCATCTCGG CCGGTTGGAC CCTCGTCTTC ATCGCTCTGC TGTATCTGAC GGCGCCTGCG
GTGGGTGCGA TGGCGCGGCT GAACATCACC GACCTGATGT GGCCGGAAGG CACGCAGGGC
GAAGCCGTGA CCATCGAGAT GATCCAGAAC GATCCGGAAT ATGCCTGGAT GAACACCTGG
CAGCAGACCG GCCTTTTGGG TTGGGAAGAC AAGAACGGCG ACGGCCGGAT CCAGTACTAC
AACGACGCCA ACCCGTCGAT GACGGAACGC GCCGAGGCGG CTGGCTGGCA GGGTAACGAG
TTGACCAACT TCAACCGGGA CATCCTGGTT CTGGCCAACC CGGAGATCGC CAACCTGCCG
GGCTGGGTCA TTGCCCTGAT CGCGGCGGGC GGTATCGCGG CCGCCCTGTC GACGGCGGCG
GGCCTGCTGC TCGCCATCTC GTCGGCGATC AGCCACGACC TGATCAAGAC CGTGTTCAAC
CCGTCCATCT CGGAGAAGGG CGAGCTGCTC GCGGCCCGGA TCTCGATGGC CGGTGCGATC
GTGGTGGCGA CCTATCTGGG GCTCAATCCG CCGGGCTTTG CGGCCCAGGT GGTGGCGCTG
GCCTTCGGTC TGGCCGCCGC GACGCTGTTC CCGGCGCTGA TGATGGGCAT CTTCTCCAAG
CGCATCAACG CAAGCGGTGC GACCTGGGGC ATGCTCGTGG GTCTGATCAG CACCTGTGCC
TACCTGTTCA CGTATCTGGG CATCTTCTTC GTCCCGGGGA CCAACTTCCT CGAGCCGACG
GCGTCCAACT ACCTGTTCGG GATCCCGCCG ACCCATTTCG GGCCGATCGG CGCGCTGCTG
AACTTCGCCG TGGCGATCCT GGTGAGCCGT GCCACCGAAG AGCCGCCGCA GGAGATCCAG
GATCTCGTCG AAAGCGTGCG CATCCCCAGG GGTGCCGGCG CGGCCGTCGA TCACTGA
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| Protein sequence | MDQTTLNIIV VGLSFALYFG IAIWARAGST SEFYAAGRGV NPVVNGMATA ADWMSAASFI
SMAGLIAFVG YSNSSFLMGW TGGYVLMALL LAPYLRKFGK FTVPEFIGDR FYSTKARVVG
VICLIVISTT YVIGQMTGAG VAFSRFLEVS STTGLVTASC VVFVYAVLGG MKGITYTQVA
QYVVLIIAYT IPAIFISLQL TGNPIPGLGL FSNMAPGQVG AGEPLLVTLD GLLTDLGFNA
YTTGSSPFLM ALFTLSLMIG TAGLPHVIIR FFTVPRVADA RISAGWTLVF IALLYLTAPA
VGAMARLNIT DLMWPEGTQG EAVTIEMIQN DPEYAWMNTW QQTGLLGWED KNGDGRIQYY
NDANPSMTER AEAAGWQGNE LTNFNRDILV LANPEIANLP GWVIALIAAG GIAAALSTAA
GLLLAISSAI SHDLIKTVFN PSISEKGELL AARISMAGAI VVATYLGLNP PGFAAQVVAL
AFGLAAATLF PALMMGIFSK RINASGATWG MLVGLISTCA YLFTYLGIFF VPGTNFLEPT
ASNYLFGIPP THFGPIGALL NFAVAILVSR ATEEPPQEIQ DLVESVRIPR GAGAAVDH
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