| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3526 |
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| Symbol | dxs2 |
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| ID | 5713757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3704933 |
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| End bp | 3706909 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641269455 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001534860 |
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| Protein GI | 159046066 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCCGGG CCCGCATTTC GCACCAGACC GCGATGGAGG AGACCACCAT GACCAACCCC
CGCCCGAAAA CCCCGACACT CGACCGCGTC GCCTGTCCCG CCGATCTCAA GGCGCTGACC
GACCGGGAGC TTGCCACCCT GGCCACCGAA CTGCGCGCCG AAGTGATCTC CGCCGTGTCC
GAGACGGGCG GGCATCTCGG CTCCTCGCTC GGCGTGGTCG AGCTGACCGT GGCGATCCAC
GCAGTGTTCA ACACGCCCTT CGACAAGCTC GTCTGGGACG TGGGCCACCA ATGCTATCCC
CACAAGGTGC TGACCGAGCG CCGCGACCGC ATCCGCACCC TGCGCCAGAA GGGGGGCCTG
TCGGGCTTCA CCAAGCGCAG CGAGAGCATC TATGACCCGT TCGGCGCGGC CCATTCGTCG
ACGTCGATTT CCGCCGCGCT GGGCTTTGCC ACGGCGCGCG ACCTGGGCGG GCCCACCGGC
GACGCCATCG CGGTGATCGG CGACGGCTCG ATCAGCGCCG GCATGGCCTA CGAGGCGATG
AACAACGCGG GCTCCGAGAA GCGCCGCCTC TTCGTGATCC TGAACGACAA CGAGATGTCC
ATCGCCCCGC CCACGGGCGC GATGTCCACC TATCTCAGCG ATCTGGCCTC GTCTGGCCCG
CTCTATGCCT TGAAGGAACT GGCCGAGGGC GTGGAACGCA GCCTGCCCGG CCCCTTGCGC
GAAGGGGCGC AGCGTGCGCG CAACCTGGTG ACCGGGGAGC ATGGCTCCTC CGCGACCCTG
TTCGAGGAGC TGGGCTTCGA CTATATCGGC CCGATCGACG GGCATGACAT CCCGCAGCTG
TTGCAGGTCC TGCGCGCCGC ACGGGCCAAG GCCAGCGGGC CGGTCCTGAT CCATGCCTGC
ACCGTCAAGG GCAAGGGCTA CTCCCCTGCC GAGCTGTCCG ACGATTGCTA CCACGGGGTC
GCCAAATTCG ACGTGGCTAC GGGCAAGCAG CAGAAATCCG CCCCCAACGC GCCGGCCTAT
ACCAAGGTGT TCGGCGCGAC CCTGACGGCG GAGGCCGAGC GCGACTCGCG CATCTGCGCG
GTGACCGCCG CCATGCCCGG GGGCACGGGC GTCAACATCA TGGGCAAGCG GTTTCCGGGG
CGGGTCTTCG ATGTGGGCAT CGCCGAACAG CACGCGGTGA CCTTCGCCGC CGGACTTGCG
GCGGGCGGGA TGAAGCCCTT CTGCGCGATC TATTCCAGTT TTCTGCAGCG CGGCTATGAC
CAGGTGGTCC ATGACGTGGC GCTGCAAAAA CTGCCGGTGC GGTTCGCCAT CGACCGCGCC
GGGCTGGTGG GGGCCGATGG GCCGACCCAT GCGGGCGCCT ATGACATCGC GTATCTGTCC
AACCTGCCCA ACATGACCGT CATGGCCGCC GCCGACGAGG CGGAGCTTGT GCATATGGTC
GCCACCGCGG CGGCCTATGA CGACGGGCCG ATCGCCTTCC GCTACCCGCG GGGCGAAGGC
GTGGGCATCG AGATGCCGGA GCGCGGCAGC CTGCTGGAGA TCGGCAAGGG CCGCATCATC
CGCGAGGGCG GGTCGGTCGC GATCCTGTCG CTCGGCGCGC ATCTGTCGGA ATGCCTCAAG
GCCGCCGAGG ATCTGGAGGC GCGCGGCATC GGTGTCACCA TCGCCGATGC GCGGTTCGCC
AAGCCGCTGG ATACCGACCT GATCGCGCAG CTGACCGCCA ATCACGAGGC GCTCATCACC
GTCGAACAGG GGGCCGAGGG CGGCTTCGGG GCCATGGTCC TGCACTGGCT GGCCCGGACC
GGGCGGCTCG ACGGGACCCT CAAGATCCGC ACCATGACCC TGCCGGACCG TTTCATCGAC
CAGGCAAGCC CGGCGGATAT GTACCACGAT GCGGGGCTCA CCGCGCGTCA CATCGCGGGG
CAGGTGCTGC ACCTGATGGG GGCGGAGACC GCGCTGCTGG AGGCGACGAC GGCCTGA
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| Protein sequence | MPRARISHQT AMEETTMTNP RPKTPTLDRV ACPADLKALT DRELATLATE LRAEVISAVS
ETGGHLGSSL GVVELTVAIH AVFNTPFDKL VWDVGHQCYP HKVLTERRDR IRTLRQKGGL
SGFTKRSESI YDPFGAAHSS TSISAALGFA TARDLGGPTG DAIAVIGDGS ISAGMAYEAM
NNAGSEKRRL FVILNDNEMS IAPPTGAMST YLSDLASSGP LYALKELAEG VERSLPGPLR
EGAQRARNLV TGEHGSSATL FEELGFDYIG PIDGHDIPQL LQVLRAARAK ASGPVLIHAC
TVKGKGYSPA ELSDDCYHGV AKFDVATGKQ QKSAPNAPAY TKVFGATLTA EAERDSRICA
VTAAMPGGTG VNIMGKRFPG RVFDVGIAEQ HAVTFAAGLA AGGMKPFCAI YSSFLQRGYD
QVVHDVALQK LPVRFAIDRA GLVGADGPTH AGAYDIAYLS NLPNMTVMAA ADEAELVHMV
ATAAAYDDGP IAFRYPRGEG VGIEMPERGS LLEIGKGRII REGGSVAILS LGAHLSECLK
AAEDLEARGI GVTIADARFA KPLDTDLIAQ LTANHEALIT VEQGAEGGFG AMVLHWLART
GRLDGTLKIR TMTLPDRFID QASPADMYHD AGLTARHIAG QVLHLMGAET ALLEATTA
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