Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3508 |
Symbol | crtI |
ID | 5713739 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3687777 |
End bp | 3689351 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641269437 |
Product | phytoene dehydrogenase |
Protein accession | YP_001534842 |
Protein GI | 159046048 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.691648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.885719 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGACAC GAGTCGACCC CATCTCCGCC GCCGAAGCCG TCACCGGCCC CCGTCAACGC GCCATCGTGA TCGGCGCCGG TCTCGGGGGG TTGGCCGCCG CCATGCGCCT CGGCGCCAAG GGCTACGCCG TCACCGTTCT GGACAAGCTC GACCGGACCG GCGGGCGCGG CTCCTCGATC TCCCAGGACG GGCACCGCTT CGACCTGGGC CCCACGATCA TCACCGTCCC CCAAGTCTAC GAGGCCCTGT GGGAGGCCTG CGGCCGCAAC TTCCACGACG ATGTTACGCT CAAGCCGCTC GACCCGTTCT ACGAGATCCG CTGGCCTGAC GGCTCCAACT TCTTCGCCCG CCAATCGACC GAGGCGATGG AGGCCGAGAT CACCCGCCTC TCCCCCGGCG ACCTGAAAGG CTATCGCCAG TTCCTCAAGG ATTCCCAGCG CCGCTATGTC GTGGGGTTCG AAGGCATGGT GGCCGAGCCG ATGCACAAGG CCTGGGACAC GATCAAGGTC CTGCCCGAGT TTGCCCTCCT GCGCGCCGAC CAGTCGATCC TGAAACTGGC CAAGAAACGG GTTAAGGACG CCCGCCTGCG CATGGCGCTG TCGTTCCATC CGCTCTTCAT CGGCGGCGAC CCGATGAACG TCACCTCCAT GTATGCCCTC GTCAGCCACC TGGAAAAGGA ATTCGGCGTC CATTACGCCA TGGGCGGGGT GCAGGCGATC GCCGACGCCA TGGCCCGGAT CGTGGCCGAC CAGGGTGGCT GGGTCCGCCT GGGCGAGACC GTAGACGAAA TCCTCGTGAC CGAACGCAAA ACCCGCGGCG TCCGCCTCGC CAGTGGCGAG GTGCTGCATG CGGATGTGGT CGTCTCCAAC GCCGATGCGG GCCACACCTA CAAACACCTC ATGCGTCAGG CCCCCAAGAA ACGCTGGACC AACGCCAAGC TCGACAGCCG CCGCTGGTCC ATGGGTCTTT TCGTGTGGTA TTTCGGCACC AAGGGCACCG CCGGCATGTG GCAGGATGTG GGCCACCACA CCATCCTCAG CGGCCCGCGC TACGAGGGCC TGCTGCGCGA CATCTTCATC AACGGGCGGC TCTCCGACGA CATGAGCCTC TATGTCCACC GCCCCTCGCT CACCGATCCC AGCGTGGCAC CCAAGGGCGA CGACACCTTC TACGTCCTGT CGCCGGTCCC CCATCTGGGC CATGACAATG GCGTCGACTG GGCGACCGAG GAACCGATCT ACAAGGCCAA GGTGCTGGCC GAGCTGGAAA AGACCATGCC CGGCATCGGG CGGCGCATCA CCACCGAAAC GGTGTTCACG CCGGAAACCT TCCGCGACAG GTATCTCTCG CCCAACGGCT CCGGCTTTTC CATCGAACCG CGCATCCTGC AATCGGCCTG GTTCCGACCC CATAATGTCT CCGAAGAGGC CGAGGGCCTG TTCCTCGCCG GCGCGGGCAC CCATCCGGGC GCAGGCGTGC CCGGCGTGAT CAGCTCGGCC GAGGTGCTGG CCAAGATGGT CCCCGACGCC GCCCCCGTCG CCACCCCGGC CCCCCTCGCG CAGGCCGCGG AATGA
|
Protein sequence | MMTRVDPISA AEAVTGPRQR AIVIGAGLGG LAAAMRLGAK GYAVTVLDKL DRTGGRGSSI SQDGHRFDLG PTIITVPQVY EALWEACGRN FHDDVTLKPL DPFYEIRWPD GSNFFARQST EAMEAEITRL SPGDLKGYRQ FLKDSQRRYV VGFEGMVAEP MHKAWDTIKV LPEFALLRAD QSILKLAKKR VKDARLRMAL SFHPLFIGGD PMNVTSMYAL VSHLEKEFGV HYAMGGVQAI ADAMARIVAD QGGWVRLGET VDEILVTERK TRGVRLASGE VLHADVVVSN ADAGHTYKHL MRQAPKKRWT NAKLDSRRWS MGLFVWYFGT KGTAGMWQDV GHHTILSGPR YEGLLRDIFI NGRLSDDMSL YVHRPSLTDP SVAPKGDDTF YVLSPVPHLG HDNGVDWATE EPIYKAKVLA ELEKTMPGIG RRITTETVFT PETFRDRYLS PNGSGFSIEP RILQSAWFRP HNVSEEAEGL FLAGAGTHPG AGVPGVISSA EVLAKMVPDA APVATPAPLA QAAE
|
| |