| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3492 |
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| Symbol | rumA |
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| ID | 5713723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3674330 |
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| End bp | 3675574 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641269421 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_001534826 |
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| Protein GI | 159046032 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAGA CACAACCCGA TACGCTGACC ATCACCCGCC TCGGCCTGCA CGGCGACGGG
ATCGCCCCCG GCCCGGTCTA TGCCGCCCGC ACCCTGCCGG GCGAGGAGAT CCGCGGTGAG
ATCACCGGCG ACCGTATCGC CGCGCCCAAG ATCGTCACGC CCTGCCCGAA CCGGGTAAAG
CCGCCGTGCC CGCACTACGC CCGCTGTGGC GGTTGTGCCT TGCAACACGC CGCCGACCCG
TTCGTGGCCG ACTGGAAGGT TCAGGTGGTG ATCGACGCGC TCTCCGCCCA CGGTCTCAGC
GCGCCGATGC GCCCGATCCG GACCTCGCCG CCGCGCACCC GCCGCCGTGC GACCCTATCG
GGCCGACGGC TGAAAAAGGG CACACTCCTG GGCTTCCACA CCCGCGCCAG CGACACGATC
GTGGACATCC CCGGCTGCGA GGTGCTCGCC CCCGCGATCA CCGAAGCCCT CCCAAGCCTC
GCCGAATTCC TGCCCCTGCT AGGCTCTCGC AAAGGGGAAT TGGCCCTCGC CGTCACCGTC
TCCGAGGCCG GGCTGGACGT GGACATCCGC GGCGGCAAAC CGCTTGACCC CGCTCTGCGC
CTGTCGCTCA CCGCGCTGAC CCAGCGGCTC GACCTCGCGC GGCTCAGCCT CGATGGCAAG
GTGTTTCTCA CCCTTCGCCC GCCCGCCCAA CACTTCGGCC CCGCCAGTGT CACACCGCCG
CCGGGCGCCT TCTTGCAGGC CACCGCCCCG GGCGAGGCCG CCCTGCTGGC CGCGGTGACC
GAGGCCGTCG GCCCCGCCAG GCGCATCGCC GACCTCTTCG CAGGTTGCGG CACCTTCGCC
CTGCCGCTGG CAACCCGGGC CGAGGTTCAC GCGGTCGAGG GCGATGCCGA CATGCTCGCG
GCGCTCGACG CGGGCTGGCG CAAGACCCCG GGTCTGTCCA AGGTCACCAC CGAGGCGCGC
GACCTCTTCC GCCGCCCGCT CCTGCCCGAC GACCTCGCGC GCTTCGGCGC CGTGGTCATC
GACCCGCCCC GCGCCGGCGC CGAGGCGCAG ACCGCGGCCT TGGCCTCCGC CCAACCCGAC
CGCATCGCTG CCGTGTCCTG CAATCCGGTT ACCTTCGCCC GTGACGCCAA AACACTTTGT
GACGCGGGCT ACGCCCTGCG CTGGGTGCAA GTGGTGGACC AGTTCCGCTG GTCCCCGCAT
GTGGAGCTTG CGGCCGCCTT CACCGCGCCC CATATCCAGC CCTGA
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| Protein sequence | MSETQPDTLT ITRLGLHGDG IAPGPVYAAR TLPGEEIRGE ITGDRIAAPK IVTPCPNRVK
PPCPHYARCG GCALQHAADP FVADWKVQVV IDALSAHGLS APMRPIRTSP PRTRRRATLS
GRRLKKGTLL GFHTRASDTI VDIPGCEVLA PAITEALPSL AEFLPLLGSR KGELALAVTV
SEAGLDVDIR GGKPLDPALR LSLTALTQRL DLARLSLDGK VFLTLRPPAQ HFGPASVTPP
PGAFLQATAP GEAALLAAVT EAVGPARRIA DLFAGCGTFA LPLATRAEVH AVEGDADMLA
ALDAGWRKTP GLSKVTTEAR DLFRRPLLPD DLARFGAVVI DPPRAGAEAQ TAALASAQPD
RIAAVSCNPV TFARDAKTLC DAGYALRWVQ VVDQFRWSPH VELAAAFTAP HIQP
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