| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3488 |
|---|
| Symbol | |
|---|
| ID | 5713719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3668799 |
|---|
| End bp | 3669398 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641269417 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_001534822 |
|---|
| Protein GI | 159046028 |
|---|
| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
|---|
| COG ID | [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTGG ATGATCTTGT CCGGCGGGTC GATCTGGCCC TGCGCACCCC GCGCGGCGGC
TCCTCCGATT TCGACCTGAA CCCGGATTTC CGGCTCACCC AGGAGCGCAA GCTTCGTCCG
GCCGCGGTGC TGGTCCCGCT GATCGAGGGG CCGAACGGCG TGGAGCTGGT ACTGACCAAA
CGGTCGTCGC GGCTGAAGCA TCATCCGGGC CAGATCGCCT TTCCCGGTGG CAAGGTCGAG
AAAAGCGATG CCTCCCCCAC CGCCGCGGCC CTGCGCGAAG CCTGGGAAGA GATCGCCCTG
CCGCCGGAGG CCGTGCGCAT CCTCGGCGCG TTGCCCTGCC ATGAGACCGT GACCAGCTTC
AACATGCACC CCTATGTGGG CCTTGTGACC GACCCGGTAG AGCTTGTGCC CGAAGCCGGG
GAGGTGGCCG AGGTGTTCCG CGTCCCTCTC TCCCATGTCA CCGATCCGGC CCGGTTCCGG
GTCGAACGTC GGCTCTGGCA GGGCAAGTGG CGGCATTTCT ACACGGTGCC TTACGGTCCC
TATTACATCT GGGGGGCGAC CGCGCGGATC CTGCGGGGGT TTGCCGACGC GCTGCAATGA
|
|---|
| Protein sequence | MPLDDLVRRV DLALRTPRGG SSDFDLNPDF RLTQERKLRP AAVLVPLIEG PNGVELVLTK
RSSRLKHHPG QIAFPGGKVE KSDASPTAAA LREAWEEIAL PPEAVRILGA LPCHETVTSF
NMHPYVGLVT DPVELVPEAG EVAEVFRVPL SHVTDPARFR VERRLWQGKW RHFYTVPYGP
YYIWGATARI LRGFADALQ
|
|---|
| |